Graph Partitioning

This repository contains research into the use of graph partitioning algorithms for assigning people shelters based on their social networks in disaster areas. Many of the ideas that appear here were done in collaboration with Nathaniel Douglass.

Initial Setup

The following setup instructions will get the prerequisites installed for running the Jupyter Notebook. These steps assume Ubuntu 16.04 (Xenial Xerus).

# ensure these are removed
sudo apt-get purge ipython3 ipython3-notebook

# requirements for python3 notebook
sudo apt-get install python3-dev python3-pip build-essential libzmq3-dev libpng-dev libjpeg8-dev libfreetype6-dev

# clone git repo and build
git clone https://github.com/sbarakat/graph-partitioning.git
cd graph-partitioning/

# not needed on Ubuntu Xenial
sudo add-apt-repository ppa:marutter/rdev
sudo apt-get update

# install R 3.2
sudo apt-get install r-base r-base-dev

# virtualenv setup
sudo pip3 install virtualenv
virtualenv -p python3 env
source env/bin/activate
pip3 install -r requirements.txt

Graph Metrics

The last section of the Jupyter Notebook produces metrics to check the quality of the partitioning algorithm. The following setup is only needed if these metrics are desired.

Requirements for MaxPerm

# for Ubuntu 14.04
sudo apt-get install libigraph0 libigraph0-dev
# for Ubuntu 16.04
sudo apt-get install libigraph0v5 libigraph0-dev
cd bin/MaxPerm/
gcc Main.c MaxPerm.c -I/usr/include/igraph/ -ligraph -lm -o MaxPerm

Requirements for OSLOM2

cd bin/
wget http://www.oslom.org/code/OSLOM2.tar.gz
tar -xvzf OSLOM2.tar.gz
rm OSLOM2.tar.gz
cd OSLOM2/
./compile_all.sh

Requirements for ComQualityMetric

cd bin/ComQualityMetric/
javac OverlappingCommunityQuality.java
javac CommunityQuality.java

MaxPerm

MaxPerm is a community detection algorithm. The code has not been included in this repository and should be retrieved from the website. Use the following commands to get it to compile on Ubuntu.

sudo apt-get install libigraph0-dev
gcc Main.c MaxPerm.c -I/usr/include/igraph  -L/usr/local/lib -ligraph -lm -o MaxPerm

Run the notebook

cd graph-partitioning/
source env/bin/activate
ipython3 notebook graph-partitioning-fennel.ipynb

Acknowledgements

Further information and the source code used in this repository can be found below:

• Original notebook adapted from Justin Vincent's research on Graph Partitioning. Released as public domain and available on GitHub.
• Fennel: Streaming Graph Partitioning for Massive Scale Graphs. A Microsoft Technical Report by Charalampos E. Tsourakakis, Christos Gkantsidis, Bozidar Radunovic, Milan Vojnovic.
• GenPerm: A Unified Method for Detecting Non-overlapping and Overlapping Communities by Tanmoy Chakraborty, Suhansanu Kumar, Niloy Ganguly, Animesh Mukherjee, Sanjukta Bhowmick. This repository makes use of the Max Permanence code for community detection.
• OSLOM
• ComQualityMetric by Mingming Chen.

Author

Sami Barakat (sami@sbarakat.co.uk)

Licensed under the MIT license. See the LICENSE file for further details.