epimixr is an R package that uses
social mixing matrices to conduct epidemiological analysis. It contains
the functions adjust_immunity (to adjust population-level immunity by
mixing patterns as described in Funk et al.,
2019), project_immunity
(to estimate immunity based on vaccination data by projecting forward
from a given starting point of age-specific susceptibility) and
epidemic_age_dist (to estimate the age distribution of an epidemic,
see also the finalsize
package which implements more functionality to perform the same task).
The current development version can be installed using the remotes
package
remotes::install_github("sbfnk/epimixr")