SBGN 10

Tobias Czauderna edited this page Jun 11, 2016 · 6 revisions

SBGN 10 will consist of a premeeting of COMBINE 2014 from August 16th to 17th 2014, and will be part of COMBINE 2014 from August 18th to 22nd in Los Angeles, USA. As many SBGN developers are also involved in other projects and standards the premeeting will allow people to participate in the SBGN discussion without distraction and develop the specifications to be discussed at COMBINE 2014.

Registration

If you plan to participate in the SBGN pre-meeting on Aug.16-17, please click here to register. The registration is free.

If you plan to attend the rest of the SBGN 10 and COMBINE 2014, please register at the COMBINE 2014 registration page.

Accommodation

See Accommodation for COMBINE 2014 for details.

Venue

Radisson Hotel, Room 201.

Travel Information

See Travel Information for COMBINE 2014 for details.

Agenda

Saturday August 16

Time Topic Speaker
08:00 Breakfast
08:30 Welcome/Introduction Huaiyu Mi
08:45 SBGN Overview and Status (pdf) Falk Schreiber
09:15 Issues to discuss
09:30 - 10:00 Update on PD Specification L1V2 (pdf) Stuart Moodie
10:00 - 10:30 Coffee break
10:30 - 12:30 PD Specification L1V2 discussion
12:30 - 14:00 Lunch
14:00 - 14:30 Introduction of DiseaseMap Project (pdf) Alexander Mazein
14:30 - 15:00 Visualization of Rule-Base Modeling (pdf) Michale Blinov
15:00 - 15:50 PD Specification L2
-generic / protein families
-style sheets
15:50 - 16:20 Coffee break
16:20 - 18:15 PD L2 Discussion (cont.)

Sunday August 17

Time Topic Speaker
08:00 Breakfast
08:30 - 09:15 Reactome and SBGN (pdf) Robin Haw
09:15 - 10:00 SBOL Visual (pdf) Jacqueline Quinn
10:00 - 10:30 PD Specification L1V2 (cont.) Stuart Moodie
10:30 - 10:45 Coffee break
10:45 - 11:15 SBGN-AF representation of LEGO (pdf) Huaiyu Mi
11:15 - 11:45 AF Specification L1V2 Huaiyu Mi
11:45 - 12:30 Mapping SBGN to BioPAX
- CellDesigner to BioPAX conversion (pdf) Anushya Muruganujan
- Discussion
12:30 - 13:40 Lunch
13:45 - 15:30 ER Specification L1V2 Anatoly Sorokin
15:30 - 16:00 Coffee break
16:00 - 18:00 The future
- funding opportunities
- SBGN dissemination
- editorial election
- SBGN competition
- next SBGN meeting
- actions and timescales

Meeting Minutes

Click here to access the meeting notes shared on a Google document.

Workshop Participants

The following will be attending the meeting.

Name Affiliation Group/Project Joining Remotely
Michael Blinov University of Connecticut Health Center BioNetGen@VCell
Tobias Czauderna IPK Gatersleben (Germany) SBGN-ED
Emek Demir MSKCC, New York BioPAX, PathwayCommons
Robin Haw Ontario Institute for Cancer Research, Toronto Reactome
Augustin Luna MSKCC, New York
Alexander Mazein EISBM-CNRS, Lyon, France DiseaseMap
Huaiyu Mi USC (USA) PANTHER Pathway; SBGN; Gene Ontology
Stuart Moodie Eight Pillars Ltd, Edinburgh, UK
Anushya Muruganujan USC
Jacqueline Quinn SBOL visual
Falk Schreiber University of Halle-Wittenberg (Germany) & Monash University Melbourne (Australia) SBGN-ED; libSBGN; VANTED
Anatoly Sorokin Institute of Cell Biophysics (Russia), University of Edinburgh (UK) SBGN
Katja Wengler NetBuilder
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