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.PHONY: ct cat com push gt checkpkg clean remove aareload
PKG=phylosim_0.17.tar.gz

ct:
git log --graph
cat: *.R
(rm PhyloSimSource.R;cat *.R > PhyloSimSource.R;true)
com: *.R
git commit -a
push:
git push --all
fetch:
git fetch --all
gt:
gitk --all
rd: *.R
( R --vanilla < ./misc/compileman.R; perl misc/RdClean.pl)
pkg: *.R rd cat
(rm pkg/R/*.R;true)
(rm PhyloSimSource.R;true)
cp *.R pkg/R/
cp PAMLdat/*.dat pkg/extdata/
cp RData/* pkg/data/
R CMD build pkg
checkpkg: pkg
R CMD check $(PKG)
clean:
(rm *.log; rm $(PKG);rm -r ./phylosim.Rcheck;rm ./pkg/man/*.Rd;rm ./pkg/R/*.R;true ) 2>&1 > /dev/null
inst: pkg
R CMD INSTALL $(PKG)
remove:
R CMD REMOVE phylosim
aareload: cat
(rm RData/*;true)
R --vanilla < misc/recreate_aamodels.R

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