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Makefile
README.md
aa_funcs.R
codon_funcs.R
common.R
constest_aa.R
constest_codon.R
constest_nucleotide.R
nucleotide_funcs.R
update_plots.R
update_ttabs.R
utils.R

README.md

Dependencies

  • R with the phylosim package installed.

  • The seqret utility from the EMBOSS package installed in the path.

  • The baseml and codeml programs installed in the path.

Issue make nuc, make aa and make codon to run the simulations.

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