diff --git a/docs/release.rst b/docs/release.rst index 9878fc2871..edf8ddfdc6 100644 --- a/docs/release.rst +++ b/docs/release.rst @@ -14,18 +14,59 @@ Unreleased # .. warning:: # Pre-release! Use :command:`pip install --pre zarr` to evaluate this release. -* Fix bug that caused double counting of groups in ``groups()`` and ``group_keys()`` - methods with V3 stores. - By :user:`Ryan Abernathey ` :issue:`1228`. -* Handle fsspec.FSMap using FSStore store - By :user:`Rafal Wojdyla ` :issue:`1304`. * Improve Zarr V3 support, adding partial store read/write and storage transformers. Add two features of the [v3 spec](https://zarr-specs.readthedocs.io/en/latest/core/v3.0.html): * storage transformers * `get_partial_values` and `set_partial_values` By :user:`Jonathan Striebel `; :issue:`1096`. -.. _release_2.13.2: +.. _release_2.13.4: + +2.13.4 +------ + +Appreciation +~~~~~~~~~~~~~ + +Special thanks to Outreachy participants for contributing to most of the +maintenance PRs. Please read the blog post summarising the contribution phase +and welcoming new Outreachy interns: +https://zarr.dev/blog/welcoming-outreachy-2022-interns/ + + +Enhancements +~~~~~~~~~~~~ + +* Handle fsspec.FSMap using FSStore store. + By :user:`Rafal Wojdyla ` :issue:`1304`. + +Bug fixes +~~~~~~~~~ + +* Fix bug that caused double counting of groups in ``groups()`` and ``group_keys()`` methods with V3 stores. + By :user:`Ryan Abernathey ` :issue:`1228`. + +* Remove unnecessary calling of `contains_array` for key that ended in `.array.json`. + By :user:`Joe Hamman ` :issue:`1149`. + +* Fix bug that caused double counting of groups in ``groups()`` and ``group_keys()`` + methods with V3 stores. + By :user:`Ryan Abernathey ` :issue:`1228`. + +Documentation +~~~~~~~~~~~~~ + +* Fix minor indexing errors in tutorial and specification examples of documentation. + By :user:`Kola Babalola ` :issue:`1277`. + +* Add `requirements_rtfd.txt` in `contributing.rst`. + By :user:`AWA BRANDON AWA ` :issue:`1243`. + +* Add documentation for find/findall using visit. + By :user:`Weddy Gikunda ` :issue:`1241`. + +* Refresh of the main landing page. + By :user:`Josh Moore ` :issue:`1173`. Maintenance ~~~~~~~~~~~ @@ -60,6 +101,77 @@ Maintenance * Delete unused files. By :user:`John Kirkham ` :issue:`1251`. +* Skip labeller for bot PRs. + By :user:`Saransh Chopra ` :issue:`1271`. + +* Restore Flake8 configuration. + By :user:`John Kirkham ` :issue:`1249`. + +* Add missing newline at EOF. + By :user:`Dimitri Papadopoulos` :issue:`1253`. + +* Add `license_files` to `pyproject.toml`. + By :user:`John Kirkham ` :issue:`1247`. + +* Adding `pyupgrade` suggestions. + By :user:`Dimitri Papadopoulos Orfanos ` :issue:`1225`. + +* Fixed some linting errors. + By :user:`Weddy Gikunda ` :issue:`1226`. + +* Added the link to main website in readthedocs sidebar. + By :user:`Stephanie_nkwatoh ` :issue:`1216`. + +* Remove redundant wheel dependency in `pyproject.toml`. + By :user:`Dimitri Papadopoulos Orfanos ` :issue:`1233`. + +* Turned on `isloated_build` in `tox.ini` file. + By :user:`AWA BRANDON AWA ` :issue:`1210`. + +* Fixed `flake8` alert and avoid duplication of `Zarr Developers`. + By :user:`Dimitri Papadopoulos Orfanos ` :issue:`1203`. + +* Bump to NumPy 1.20+ in `environment.yml`. + By :user:`John Kirkham ` :issue:`1201`. + +* Bump to NumPy 1.20 in `pyproject.toml`. + By :user:`Dimitri Papadopoulos Orfanos ` :issue:`1192`. + +* Remove LGTM (`.lgtm.yml`) configuration file. + By :user:`Dimitri Papadopoulos Orfanos ` :issue:`1191`. + +* Codespell will skip `fixture` in pre-commit. + By :user:`Dimitri Papadopoulos Orfanos ` :issue:`1197`. + +* Add msgpack in `requirements_rtfd.txt`. + By :user:`Emmanuel Bolarinwa ` :issue:`1188`. + +* Added license to docs fixed a typo from `_spec_v2` to `_spec_v3`. + By :user:`AWA BRANDON AWA ` :issue:`1182`. + +* Fixed installation link in `README.md`. + By :user:`AWA BRANDON AWA ` :issue:`1177`. + +* Fixed typos in `installation.rst` and `release.rst`. + By :user:`Chizoba Nweke ` :issue:`1178`. + +* Set `docs/conf.py` language to `en`. + By :user:`AWA BRANDON AWA ` :issue:`1174`. + +* Added `installation.rst` to the docs. + By :user:`AWA BRANDON AWA ` :issue:`1170`. + +* Adjustment of year to `2015-2018` to `2015-2022` in the docs. + By :user:`Emmanuel Bolarinwa ` :issue:`1165`. + +* Updated `Forking the repository` section in `contributing.rst`. + By :user:`AWA BRANDON AWA ` :issue:`1171`. + +* Updated GitHub actions. + By :user:`Dimitri Papadopoulos Orfanos ` :issue:`1134`. + +* Uopdate web links: `http:// → https://`. + By :user:`Dimitri Papadopoulos Orfanos ` :issue:`1313`. .. _release_2.13.3: diff --git a/notebooks/dask_copy.ipynb b/notebooks/dask_copy.ipynb index 5cb712508c..ba4391737a 100644 --- a/notebooks/dask_copy.ipynb +++ b/notebooks/dask_copy.ipynb @@ -33,7 +33,7 @@ "text/html": [ "\n", "
\n", - " \n", + " \n", " Loading BokehJS ...\n", "
" ] diff --git a/notebooks/dask_count_alleles.ipynb b/notebooks/dask_count_alleles.ipynb index 8ca462b232..8b9b7cec6e 100644 --- a/notebooks/dask_count_alleles.ipynb +++ b/notebooks/dask_count_alleles.ipynb @@ -26,7 +26,7 @@ "text/html": [ "\n", "
\n", - " \n", + " \n", " Loading BokehJS ...\n", "
" ] diff --git a/requirements_dev_minimal.txt b/requirements_dev_minimal.txt index d5e0798e86..34d7d98e7e 100644 --- a/requirements_dev_minimal.txt +++ b/requirements_dev_minimal.txt @@ -5,4 +5,4 @@ numcodecs==0.11.0 msgpack-python==0.5.6 setuptools-scm==7.1.0 # test requirements -pytest==7.2.0 +pytest==7.2.1 diff --git a/requirements_dev_numpy.txt b/requirements_dev_numpy.txt index 6b5b91b6c8..7d373a254d 100644 --- a/requirements_dev_numpy.txt +++ b/requirements_dev_numpy.txt @@ -1,4 +1,4 @@ # Break this out into a separate file to allow testing against # different versions of numpy. This file should pin to the latest # numpy version. -numpy==1.24.0 +numpy==1.24.1 diff --git a/requirements_dev_optional.txt b/requirements_dev_optional.txt index 05cc2b8730..5d7dc3398c 100644 --- a/requirements_dev_optional.txt +++ b/requirements_dev_optional.txt @@ -3,12 +3,12 @@ lmdb==1.4.0; sys_platform != 'win32' # optional library requirements for Jupyter ipytree==0.2.2 -ipywidgets==8.0.3 +ipywidgets==8.0.4 # optional library requirements for services # don't let pyup change pinning for azure-storage-blob, need to pin to older # version to get compatibility with azure storage emulator on appveyor (FIXME) azure-storage-blob==12.14.1 # pyup: ignore -redis==4.4.0 +redis==4.4.2 types-redis types-setuptools pymongo==4.3.3