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README.md

Image.sc forum Join the chat at https://gitter.im/scenerygraphics/SciView

sciview - interactive visualisation in vr for fiji & imagej2

SciView is an ImageJ/FIJI plugin for 3D visualization of images and meshes. It uses scenery as a rendering backend and supports rendering to VR headsets via OpenVR.

sciview running the Game of Life 3D demo

sciview running the Game of Life 3D demo (see Demo > Game of Life 3D).

Documentation is being developed.

Adding to Fiji

In Fiji, go to Help -> Update and activate the SciView update site. In case you need to add it manually, the address is https://sites.imagej.net/SciView.

Note you can access the latest version of SciView (as reflected by the master branch of this repository) by adding this update site to ImageJ manually:
https://sites.imagej.net/SciView-Unstable/

Developers

Kyle Harrington, University of Idaho & Ulrik Guenther, MPI-CBG

Contributors

  • Curtis Rueden (University of Wisconsin, Madison)
  • Aryaman Gupta (MPI-CBG)
  • Tobias Pietzsch (MPI-CBG)
  • Robert Haase (MPI-CBG)
  • Jan Eglinger (FMI Basel)
  • Stephan Saalfeld (HHMI Janelia Farm)

Citation

In case you use sciview or scenery in a scientific publication, please cite this paper:

  • Ulrik Günther, Tobias Pietzsch, Aryaman Gupta, Kyle I.S. Harrington, Pavel Tomancak, Stefan Gumhold, and Ivo F. Sbalzarini: scenery — Flexible Virtual Reality Visualisation on the Java VM. IEEE VIS 2019 (accepted, arXiv:1906.06726).

Resources

DevOps

Triggering uploads to the update site:

Add either [SV_IJ_DEPLOY_UNSTABLE] or [SV_IJ_DEPLOY_PRIMARY] to a commit message

Acknowledgements

This software contains the following 3rd party libraries:

  • IntelliJ UI code, by JetBrains (licensed under the Apache Software License 2.0), see src/main/java/com/intellij
  • trove4j, by the Trove4j team (licensed under the Lesser GNU Public License 3.0), see src/main/java/gnu

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SciView is an ImageJ-based tool for visualization and interaction with ND data

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