@SchlossLab

SchlossLab

The laboratory of Pat Schloss at the University of Michigan

  • Investigating the gut virus communities associated with colon cancer.

    PostScript 4 4 MIT Updated Sep 20, 2018
  • R 1 1 MIT Updated Sep 17, 2018
  • The website for the Schloss Lab at the University of Michigan

    CSS 2 16 Updated Sep 6, 2018
  • repo for the paper

    R 1 Updated Jul 18, 2018
  • Kaitlin's repo for the LR KWS colon project

    HTML 1 MIT Updated Jul 18, 2018
  • Repository associated with Jenior ML, et al. (2018). mSphere.

    R 3 2 MIT Updated Jul 17, 2018
  • Commentary on reproducible research in microbiology

    TeX MIT Updated May 18, 2018
  • TeX 1 MIT Updated Apr 27, 2018
  • Makefile 8 33 Updated Apr 26, 2018
  • Using graph database techniques to understand the infectious relationships between bacteria and phages.

    PostScript 4 MIT Updated Mar 8, 2018
  • Repo associated with Jenior et. al. (2017). Clostridium difficile Colonizes Alternative Nutrient Niches during Infection across Distinct Murine Gut Microbiomes. mSystems.

    R 1 2 MIT Updated Jan 9, 2018
  • TeX 1 2 MIT Updated Nov 21, 2017
  • Makefile MIT Updated Nov 1, 2017
  • Repository to accompany "Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system"

    Shell 5 2 MIT Updated Nov 1, 2017
  • Shell 4 MIT Updated Nov 1, 2017
  • R 4 5 MIT Updated Oct 17, 2017
  • R MIT Updated Sep 19, 2017
  • HTML 2 MIT Updated Sep 17, 2017
  • Paper describing opticlust method published in mSphere

    PostScript MIT Updated Feb 9, 2017
  • Repository to accompany "Manipulation of the Gut Microbiome Reveals Role for Microbial Community Structure in Colon Tumorigenesis"

    R 3 MIT Updated Dec 9, 2016
  • R package to work with output files from mothur

    R 19 10 GPL-3.0 Updated Dec 7, 2016
  • 27 15 Updated Dec 6, 2016
  • Example of how to develop outlines and convert them to papers

    1 MIT Updated Oct 20, 2016
  • Replication study of He et al. (2015) in Microbiome by Pat Schloss & Sarah Westcott

    TeX 3 MIT Updated Jul 5, 2016
  • Microbiota-based model improves the sensitivity for detecting colonic lesions

    R 12 4 MIT Updated Jun 19, 2016
  • Repository for Schubert et al. 2014 published in mBio

    Makefile MIT Updated Apr 25, 2016
  • Update of the 2004 Schloss & Handelsman MMBR paper "Status of the Microbial Census"

    TeX 2 MIT Updated Apr 22, 2016
  • IPython extension for running mothur commands in an IPython notebook

    Jupyter Notebook 9 3 GPL-3.0 Updated Mar 26, 2016
  • Repo for Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system

    TeX 6 1 MIT Updated Mar 17, 2016
  • Template for computational laboratory notebooks

    CSS 8 MIT Updated Mar 9, 2016