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Investigating the gut virus communities associated with colon cancer.
The website for the Schloss Lab at the University of Michigan
repo for the paper
Kaitlin's repo for the LR KWS colon project
Repository associated with Jenior ML, et al. (2018). mSphere.
Commentary on reproducible research in microbiology
Using graph database techniques to understand the infectious relationships between bacteria and phages.
Repo associated with Jenior et. al. (2017). Clostridium difficile Colonizes Alternative Nutrient Niches during Infection across Distinct Murine Gut Microbiomes. mSystems.
Repository to accompany "Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system"
Paper describing opticlust method published in mSphere
Repository to accompany "Manipulation of the Gut Microbiome Reveals Role for Microbial Community Structure in Colon Tumorigenesis"
R package to work with output files from mothur
Example of how to develop outlines and convert them to papers
Replication study of He et al. (2015) in Microbiome by Pat Schloss & Sarah Westcott
Microbiota-based model improves the sensitivity for detecting colonic lesions
Repository for Schubert et al. 2014 published in mBio
Update of the 2004 Schloss & Handelsman MMBR paper "Status of the Microbial Census"
IPython extension for running mothur commands in an IPython notebook
Repo for Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system
Template for computational laboratory notebooks