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Sample TIFF data fails to open #221

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hinerm opened this issue Sep 4, 2014 · 0 comments
Open

Sample TIFF data fails to open #221

hinerm opened this issue Sep 4, 2014 · 0 comments
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@hinerm
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hinerm commented Sep 4, 2014

See: http://fiji.sc/bugzilla/show_bug.cgi?id=848 for original ticket and sample data.

Expected exception:

java.lang.IllegalArgumentException: Not a linear axis: null
    at io.scif.util.FormatTools.calibrate(FormatTools.java:257)
    at io.scif.ome.formats.OMETIFFFormat$Metadata.populateImageMetadata(OMETIFFFormat.java:385)
    at io.scif.AbstractParser.parse(AbstractParser.java:254)
    at io.scif.ome.formats.OMETIFFFormat$Parser.parse(OMETIFFFormat.java:603)
    at io.scif.ome.formats.OMETIFFFormat$Parser.parse(OMETIFFFormat.java:546)
    at io.scif.AbstractParser.parse(AbstractParser.java:335)
    at io.scif.AbstractParser.parse(AbstractParser.java:52)
    at io.scif.AbstractReader.setSource(AbstractReader.java:270)
    at io.scif.services.DefaultInitializeService.initializeReader(DefaultInitializeService.java:90)
    at io.scif.img.ImgOpener.createReader(ImgOpener.java:542)
    at io.scif.img.ImgOpener.openImgs(ImgOpener.java:144)
    at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:266)
    at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:250)
    at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:78)
    at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:50)
    at net.imagej.legacy.plugin.DefaultLegacyOpener.open(DefaultLegacyOpener.java:135)
    at net.imagej.legacy.DefaultLegacyHooks.interceptFileOpen(DefaultLegacyHooks.java:420)
    at net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:153)
    at ij.IJ.runPlugIn(IJ.java)
    at ij.Executer.runCommand(Executer.java:131)
    at ij.Executer.run(Executer.java:64)
    at java.lang.Thread.run(Thread.java:695)
@hinerm hinerm self-assigned this Sep 4, 2014
@hinerm hinerm changed the title TIFF failure Sample TIFF data fails to open Sep 4, 2014
@hinerm hinerm added this to the m1 milestone Mar 11, 2015
@hinerm hinerm modified the milestones: m1, m2 Oct 15, 2021
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