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[MRG] Deprecate lsh forest #9078

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merged 3 commits into from Jun 10, 2017
Merged

[MRG] Deprecate lsh forest #9078

merged 3 commits into from Jun 10, 2017

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@ldirer
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@ldirer ldirer commented Jun 9, 2017

Reference Issue

Fixes #8996

What does this implement/fix? Explain your changes.

Add a deprecation (removed in 0.21) and performance warning for LSHForest.

Any other comments?

  • I could use help on a better message for performance warning ;).
  • Should we put the performance warning message in the deprecation message?
    Since both are linked it would make sense I think. For now I issued 2 separate warnings.
  • I'm puzzled by the @ignore_warnings decorator which does not seem to be doing his job in nested function calls: I had to use inline calls to ignore_warnings everywhere, which is not super nice.
@ldirer ldirer changed the title Deprecate lsh forest [WIP] Deprecate lsh forest Jun 9, 2017
@ogrisel
ogrisel reviewed Jun 9, 2017
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sklearn/neighbors/approximate.py Outdated
@@ -217,6 +217,10 @@ def __init__(self, n_estimators=10, radius=1.0, n_candidates=50,
self.min_hash_match = min_hash_match
self.radius_cutoff_ratio = radius_cutoff_ratio

warnings.warn("LSHForest has poor performance.")

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@ogrisel

ogrisel Jun 9, 2017 •
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Please remove that line. Or making an inline comment instead of an independent UserWarning.

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@ldirer

ldirer Jun 9, 2017
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The original issue mentioned

LSHForest should be deprecated and scheduled for removal in 0.21. It should also warn about having bad performance

I could make the deprecation warning:

    LSHForest has poor performance and has been deprecated in 0.19. It will be removed in version 0.21.
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@ogrisel ogrisel commented Jun 9, 2017 •
edited

Remaining TODOs:

  • remove any reference to LSHForest in the narrative documentation, API documentation and examples.
  • update whats_new.rst to mention the deprecation.
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@ldirer ldirer commented Jun 9, 2017

I removed the section on approximate neighbors entirely, but I'm having second thoughts about it.
I think it's informative (beyond what's implemented in scikit-learn).

If we go ahead and remove it I'll mention in the relevant PRs (that allow ANN, I think PR #8999 does that) that what we removed can be used as a basis for new documentation.

I would have liked to keep some paragraphs but it feels weird to have general considerations that don't relate to any scikit-learn class.
@ldirer ldirer changed the title [WIP] Deprecate lsh forest [MRG] Deprecate lsh forest Jun 9, 2017
@amueller
amueller reviewed Jun 9, 2017
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doc/whats_new.rst Outdated
@@ -427,6 +427,10 @@ API changes summary
:class:`cluster.bicluster.SpectralBiclustering` now accept ``y`` in fit.
:issue:`6126` by `Andreas Müller`_.

- :class:`neighbors.approximate.LSHForest` has been deprecated and will be
removed in 0.21 due to poor performance.
:issue:`8996` by `Andreas Müller`_.

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@amueller

amueller Jun 9, 2017
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the by refers to the person coding, not the issue raiser
@ldirer ldirer force-pushed the ldirer:deprecate-lsh-forest branch from 13c339a to af9da5a Jun 9, 2017
@ogrisel
ogrisel approved these changes Jun 9, 2017
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@ogrisel ogrisel left a comment

Let's also delete benchmarks/bench_plot_approximate_neighbors.py and +1 on my side.
ldirer added 3 commits Jun 9, 2017
@ldirer
Add deprecation message and test.
da96038
@ldirer
Adding performance warning and ignore_warnings in test
6574da1
@ldirer
Add deprecation to whatsnew and remove LSHForest references from docs.
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bb584f9 
Removing benchmark for lsh
@ldirer ldirer force-pushed the ldirer:deprecate-lsh-forest branch from af9da5a to bb584f9 Jun 9, 2017
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@ldirer ldirer commented Jun 10, 2017

Appveyor seems to have randomly failed but otherwise I think it's ready for merge.
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@amueller amueller commented Jun 10, 2017

LGTM, thanks
@amueller amueller merged commit 2a1410b into scikit-learn:master Jun 10, 2017
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Sundrique added a commit to Sundrique/scikit-learn that referenced this pull request Jun 14, 2017
@ldirer @Sundrique
[MRG] Deprecate lsh forest (scikit-learn#9078)
32c9489 
* Add deprecation message and test.

* Adding performance warning and ignore_warnings in test

* Add deprecation to whatsnew and remove LSHForest references from docs.

Removing benchmark for lsh
@bmanohar16 bmanohar16 mentioned this pull request Jul 20, 2017
Closed
dmohns added a commit to dmohns/scikit-learn that referenced this pull request Aug 7, 2017
@ldirer @dmohns
[MRG] Deprecate lsh forest (scikit-learn#9078)
7cd6190 
* Add deprecation message and test.

* Adding performance warning and ignore_warnings in test

* Add deprecation to whatsnew and remove LSHForest references from docs.

Removing benchmark for lsh
dmohns added a commit to dmohns/scikit-learn that referenced this pull request Aug 7, 2017
@ldirer @dmohns
[MRG] Deprecate lsh forest (scikit-learn#9078)
ffa4eb7 
* Add deprecation message and test.

* Adding performance warning and ignore_warnings in test

* Add deprecation to whatsnew and remove LSHForest references from docs.

Removing benchmark for lsh
NelleV added a commit to NelleV/scikit-learn that referenced this pull request Aug 11, 2017
@ldirer @NelleV
[MRG] Deprecate lsh forest (scikit-learn#9078)
324bc62 
* Add deprecation message and test.

* Adding performance warning and ignore_warnings in test

* Add deprecation to whatsnew and remove LSHForest references from docs.

Removing benchmark for lsh
paulha added a commit to paulha/scikit-learn that referenced this pull request Aug 19, 2017
@ldirer @paulha
[MRG] Deprecate lsh forest (scikit-learn#9078)
ea995da 
* Add deprecation message and test.

* Adding performance warning and ignore_warnings in test

* Add deprecation to whatsnew and remove LSHForest references from docs.

Removing benchmark for lsh
AishwaryaRK added a commit to AishwaryaRK/scikit-learn that referenced this pull request Aug 29, 2017
@ldirer @AishwaryaRK
[MRG] Deprecate lsh forest (scikit-learn#9078)
fe702b6 
* Add deprecation message and test.

* Adding performance warning and ignore_warnings in test

* Add deprecation to whatsnew and remove LSHForest references from docs.

Removing benchmark for lsh
maskani-moh added a commit to maskani-moh/scikit-learn that referenced this pull request Nov 15, 2017
@ldirer @maskani-moh
[MRG] Deprecate lsh forest (scikit-learn#9078)
7b491c3 
* Add deprecation message and test.

* Adding performance warning and ignore_warnings in test

* Add deprecation to whatsnew and remove LSHForest references from docs.

Removing benchmark for lsh
jwjohnson314 pushed a commit to jwjohnson314/scikit-learn that referenced this pull request Dec 18, 2017
@ldirer Jeremiah Johnson
[MRG] Deprecate lsh forest (scikit-learn#9078)
ce93d59 
* Add deprecation message and test.

* Adding performance warning and ignore_warnings in test

* Add deprecation to whatsnew and remove LSHForest references from docs.

Removing benchmark for lsh
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Deprecate LSHForest
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