diff --git a/main.nf b/main.nf index d2136a0..18c18e3 100755 --- a/main.nf +++ b/main.nf @@ -1261,7 +1261,8 @@ process PFT_Seeding_Mask { export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=1 export OMP_NUM_THREADS=1 export OPENBLAS_NUM_THREADS=1 - mrcalc $fa $params.pft_fa_seeding_mask_threshold -ge ${sid}__pft_seeding_mask.nii.gz + mrcalc $fa $params.pft_fa_seeding_mask_threshold -ge ${sid}__pft_seeding_mask.nii.gz\ + -datatype uint8 """ } @@ -1328,7 +1329,8 @@ process Local_Tracking_Mask { export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=1 export OMP_NUM_THREADS=1 export OPENBLAS_NUM_THREADS=1 - mrcalc $fa $params.local_fa_tracking_mask_threshold -ge ${sid}__local_tracking_mask.nii.gz -datatype uint8 + mrcalc $fa $params.local_fa_tracking_mask_threshold -ge ${sid}__local_tracking_mask.nii.gz\ + -datatype uint8 """ }