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pwem is a Python module of Scipion framework for image processing in Electron Microscopy

The entire collection is licensed under the terms of the GNU Public License, version 3 (GPLv3).


To install pwem for development purposes, one can do:

# Create a clean virtual environment
conda create -n scipion python=3.8
conda activate
git clone
cd scipion-em
pip install -e .

Running tests

conda activate scipion
cd scipion-em
export SCIPION_DOMAIN="pwem"
python -m unittest discover

API documentation