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Plugin to use cryoEF program within the Scipion framework
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README.md

Cryoef plugin

This plugin provide a wrapper around cryoEF program.

build status

Installation

You will need to use 2.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:

a) Stable version

scipion installp -p scipion-em-cryoef

b) Developer's version

  • download repository
 git clone https://github.com/scipion-em/scipion-em-cryoef.git
  • install
 scipion installp -p path_to_scipion-em-cryoef --devel

CryoEF binaries will be installed automatically with the plugin, but you can also link an existing installation. Default installation path assumed is software/em/cryoEF-1.1.0, if you want to change it, set CRYOEF_HOME in scipion.conf file to the folder where the cryoEF is installed. To check the installation, simply run the following Scipion test:

scipion test cryoef.tests.test_protocols_cryoef.TestCryoEF

Supported versions

1.1.0

Protocols

Detailed manual can be found in software/em/cryoEF-1.1.0/cryoEF_v1.1.0_manual.pdf

References

1. Naydenova, K and Russo, CJ "Measuring the effects of particle orientation to improve the efficiency of electron cryomicroscopy" Nature Communications (2017).

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