Skip to content
Plugin to use Emxlib programs within the Scipion framework
Branch: devel
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
emxlib
.gitignore
CHANGES.txt
LICENSE
MANIFEST.in
README.rst
setup.py

README.rst

EMXlib plugin

This plugin allows to import metadata to and from EMX format

Electron Microscopy eXchange (EMX) initiative was launched at the 2012 Instruct Image Processing Center Developer Workshop with the intention of developing a first set of standard conventions for the interchange of information for single-particle analysis (see URL and https://www.ncbi.nlm.nih.gov/pubmed/26873784 for details).

Install this plugin

You will need to use 2.0.0 version of Scipion to run these protocols. To install the plugin, you have two options:

  • Stable version
scipion installp -p scipion-em-emxlib

OR

  • through the plugin manager GUI by launching Scipion and following Configuration >> Plugins
  • Developer's version
  1. Download repository:
git clone https://github.com/scipion-em/scipion-em-emxlib.git
  1. Install:
scipion installp -p path_to_scipion-em-emxlib --devel
  • Binary files

No binary files are needed.

  • Tests

To check the installation, simply run the following Scipion tests:

  • scipion test emxlib.tests.test_workflow_emx.TestEmxWeb
  • scipion test emxlib.tests.test_protocols_emx.TestEmxBase
  • scipion test emxlib.tests.test_protocols_export_particles.TestExportParticlesEMX

Protocols

  • emx export: export particles, micrograph, CTFs, etc to EMX format
  • general import (particles, micrographs, etc) allow metadata information to be encoded using EMX conventions

Examples

See URL

Buildbot status

Status devel version:

Status production version:

You can’t perform that action at this time.