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Paper: Solving Polynomial Systems with phcpy #461

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merged 70 commits into from Jul 3, 2019
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98cfd3e
a very modest start of the paper ...
janverschelde Apr 23, 2019
1da4b1c
extended reference list, added two paragraphs of text and a figure
janverschelde Apr 27, 2019
7d64ccc
added section on CGI scripting and more references
janverschelde Apr 27, 2019
04b0bdd
changed python into python3
janverschelde Apr 28, 2019
65194dc
added one section on jupyterhub and more references
janverschelde Apr 28, 2019
825cd04
added a figure and a section on mechanism design
janverschelde Apr 29, 2019
6b5813f
added a section on mission and realization
janverschelde May 1, 2019
b9d6f33
added the beginning of a section on quality up
janverschelde May 3, 2019
211122f
added references to MixedVol, DEMiCs, QDlib
janverschelde May 4, 2019
3115b61
added version numbers, jump from 0.1.5 to 0.9.4
janverschelde May 8, 2019
c81e1c5
added another beginning of a section to the skeleton of the paper
janverschelde May 11, 2019
7292a40
nest some sections
JazzTap May 11, 2019
ca9fce0
gathering past and likely future uses of the library, by literature s…
JazzTap May 11, 2019
1369eeb
Merge pull request #1 from JazzTap/2019
janverschelde May 11, 2019
e5640f2
Eliminated the Belief Propagation section because the calculations in…
janverschelde May 13, 2019
8ba9500
added more references in the related software section
janverschelde May 13, 2019
e67a687
expanded the quality up section
janverschelde May 13, 2019
6e7442c
tuesday kickoff
JazzTap May 14, 2019
77a08cb
citation pass
JazzTap May 15, 2019
cc7e990
Merge branch '2019' of https://github.com/JazzTap/scipy_proceedings i…
JazzTap May 15, 2019
8f0401c
renamed the section title Intensive Methods into Solving Polynomial S…
janverschelde May 16, 2019
3845135
reference wrangling
JazzTap May 16, 2019
4143019
Merge remote-tracking branch 'verschelde/2019' into 2019
JazzTap May 16, 2019
bb7a135
incorporate survey of numerical alg geom
JazzTap May 17, 2019
132094c
Merge pull request #2 from JazzTap/2019
janverschelde May 17, 2019
1fbe1ed
updated version number to 0.9.5 and number of user accounts to 146
janverschelde May 17, 2019
d2c647f
bibliography - applications
JazzTap May 17, 2019
f18d0c5
Merge remote-tracking branch 'verschelde/2019' into 2019
JazzTap May 17, 2019
8417c31
direct manipulation, systems biology
JazzTap May 18, 2019
385d569
direct manipulation figure
JazzTap May 18, 2019
b14361d
continue staging references
JazzTap May 18, 2019
968a1de
rigid graph theory
JazzTap May 18, 2019
71e86db
added the use of the cyclic 4-roots problem in the SymPy online docum…
janverschelde May 19, 2019
b4ce013
Merge remote-tracking branch 'verschelde/2019' into 2019
JazzTap May 19, 2019
d97b36a
mentioned CASC 2018 paper after solving the cyclic 8-roots problem
janverschelde May 19, 2019
abffbcf
new picture visualizes elapsed performances
janverschelde May 19, 2019
cc7e89a
inserted figure on elapsed performances
janverschelde May 19, 2019
e625de3
more applications
JazzTap May 19, 2019
dc3855f
close out examples
JazzTap May 19, 2019
7eabc29
Merge branch '2019' into 2019
JazzTap May 19, 2019
b7c5c0e
Merge pull request #3 from JazzTap/2019
janverschelde May 19, 2019
6c8f06c
made a first pass through the paper, editing the mission section,
janverschelde May 20, 2019
3f1abee
added an explicit reference in the text to the Bertini book
janverschelde May 20, 2019
55479c9
Initial Review submission
loldja Jun 10, 2019
35d4c59
changed the make_paper.sh back to its original state
janverschelde Jun 17, 2019
ab5a616
corrected some (not all yet) of the mistakes pointed out in the reviews,
janverschelde Jun 17, 2019
15558b6
Revise text
JazzTap Jun 18, 2019
659917b
Merge pull request #4 from loldja/2019
janverschelde Jun 18, 2019
e8afc94
removed the inline high level comments
janverschelde Jun 18, 2019
79a1219
applied the changes as in the Revise text #5
janverschelde Jun 18, 2019
eb9e2f4
Merge branch '2019' into 2019
janverschelde Jun 18, 2019
e098efc
Merge pull request #5 from JazzTap/2019
janverschelde Jun 18, 2019
d36f46e
Update phcpy.rst
janverschelde Jun 18, 2019
490ef97
removed duplicate reference SymPyDocs
janverschelde Jun 18, 2019
8b79726
added a paragraph in the introduction describing homotopy continuation
janverschelde Jun 18, 2019
27efffc
added references for the three classes of homotopies, mentioned free …
janverschelde Jun 18, 2019
0a5dee1
changed 'Mission' as section header into 'A Scripting Interface for P…
janverschelde Jun 19, 2019
cae402d
added thesis dissertation of Xiangcheng Yu, figured out floating plac…
janverschelde Jun 19, 2019
c1faad6
Merge remote-tracking branch 'upstream/2019' into 2019
JazzTap Jun 20, 2019
cccce99
Lint text
JazzTap Jun 20, 2019
f3618ec
Add to abstract, rearrange introductions.
JazzTap Jun 20, 2019
fc57577
Merge remote-tracking branch 'upstream/2019' into 2019
JazzTap Jun 20, 2019
cfe0957
your own -> one's own
JazzTap Jun 20, 2019
24bfb76
Update phcpy.rst
JazzTap Jun 20, 2019
04e4800
Merge branch '2019' of https://github.com/janverschelde/scipy_proceed…
JazzTap Jun 21, 2019
aa13d03
merge references
JazzTap Jun 21, 2019
5c2e8da
reword direct manipulation
JazzTap Jun 21, 2019
12840a6
fix et al.
JazzTap Jun 21, 2019
d0df2eb
Merge pull request #6 from JazzTap/2019
janverschelde Jun 21, 2019
8617eee
fixed the hopotopies spelling mistake
janverschelde Jun 22, 2019
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removed duplicate reference SymPyDocs

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janverschelde committed Jun 18, 2019
commit 490ef974cc50bfed976503b9094af4532888d5df
@@ -691,9 +691,6 @@ References
.. [JUP15] *Jupyter notebook snippets menu - jupyter-contrib-nbextensions 0.5.0*
https://jupyter-contrib-nbextensions.readthedocs.io/en/latest/nbextensions/snippets_menu/readme.html.
.. [SymPyDocs] *SymPy 1.3 documentation.*
https://docs.sympy.org/latest/index.html
.. [Klu16] T. Kluyver, B. Ragan-Kelley, F. P |eacute| rez, B. Granger,
M. Bussonnier, J. Frederic, K. Kelley, J. Hamrick, J. Grout,
S. Corlay, P. Ivanov, D. Avila, S. Abdalla, C. Willing,
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