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""" Functions that operate on sparse matrices
"""
__all__ = ['count_blocks','estimate_blocksize']
from csr import isspmatrix_csr, csr_matrix
from csc import isspmatrix_csc
from sparsetools import csr_count_blocks
def extract_diagonal(A):
raise NotImplementedError('use .diagonal() instead')
#def extract_diagonal(A):
# """extract_diagonal(A) returns the main diagonal of A."""
# #TODO extract k-th diagonal
# if isspmatrix_csr(A) or isspmatrix_csc(A):
# fn = getattr(sparsetools, A.format + "_diagonal")
# y = empty( min(A.shape), dtype=upcast(A.dtype) )
# fn(A.shape[0],A.shape[1],A.indptr,A.indices,A.data,y)
# return y
# elif isspmatrix_bsr(A):
# M,N = A.shape
# R,C = A.blocksize
# y = empty( min(M,N), dtype=upcast(A.dtype) )
# fn = sparsetools.bsr_diagonal(M//R, N//C, R, C, \
# A.indptr, A.indices, ravel(A.data), y)
# return y
# else:
# return extract_diagonal(csr_matrix(A))
def estimate_blocksize(A,efficiency=0.7):
"""Attempt to determine the blocksize of a sparse matrix
Returns a blocksize=(r,c) such that
- A.nnz / A.tobsr( (r,c) ).nnz > efficiency
"""
if not (isspmatrix_csr(A) or isspmatrix_csc(A)):
A = csr_matrix(A)
if A.nnz == 0:
return (1,1)
if not 0 < efficiency < 1.0:
raise ValueError('efficiency must satisfy 0.0 < efficiency < 1.0')
high_efficiency = (1.0 + efficiency) / 2.0
nnz = float(A.nnz)
M,N = A.shape
if M % 2 == 0 and N % 2 == 0:
e22 = nnz / ( 4 * count_blocks(A,(2,2)) )
else:
e22 = 0.0
if M % 3 == 0 and N % 3 == 0:
e33 = nnz / ( 9 * count_blocks(A,(3,3)) )
else:
e33 = 0.0
if e22 > high_efficiency and e33 > high_efficiency:
e66 = nnz / ( 36 * count_blocks(A,(6,6)) )
if e66 > efficiency:
return (6,6)
else:
return (3,3)
else:
if M % 4 == 0 and N % 4 == 0:
e44 = nnz / ( 16 * count_blocks(A,(4,4)) )
else:
e44 = 0.0
if e44 > efficiency:
return (4,4)
elif e33 > efficiency:
return (3,3)
elif e22 > efficiency:
return (2,2)
else:
return (1,1)
def count_blocks(A,blocksize):
"""For a given blocksize=(r,c) count the number of occupied
blocks in a sparse matrix A
"""
r,c = blocksize
if r < 1 or c < 1:
raise ValueError('r and c must be positive')
if isspmatrix_csr(A):
M,N = A.shape
return csr_count_blocks(M,N,r,c,A.indptr,A.indices)
elif isspmatrix_csc(A):
return count_blocks(A.T,(c,r))
else:
return count_blocks(csr_matrix(A),blocksize)
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