• AFNI-based brain warping based on D99 Macaque Atlas warp scripts

    Shell Updated Jan 21, 2017
  • Classification of par/rec MR data from Philips

    Python Updated Jan 18, 2017
  • Extract metadata from raw DICOM data from Siemens, Philips, or GE.

    Python Updated Jan 18, 2017
  • SciTran DICOM Conversion Tool

    Python Updated Jan 18, 2017
  • DICOM/PAR-REC conversion to nifti using Rorden's dcm2nii (v.4AUG14)

    Shell Updated Jan 17, 2017
  • Applies the retinotopy templates from Benson et al. (2014) PLOS Comput Biol to a FreeSurfer subject output.

    Shell Updated Jan 6, 2017
  • Estimates a first-level model for the tasks used in the ENGAGE and RAD studies.

    Python Updated Dec 15, 2016
  • Calculate the RMSE between a tensor fit from dtiInit and the diffusion weighted imaging data

    Matlab Updated Dec 15, 2016
  • Reorient NIfTI data and metadata fields into RAS space

    Shell Updated Dec 14, 2016
  • Performs all, or any part of, the FreeSurfer cortical reconstruction process.

    Shell Updated Dec 12, 2016
  • DICOM/PAR-REC conversion to nifti using Rorden's dcm2niix

    Shell Updated Nov 30, 2016
  • Time Series Diff Analysis - Analyzes differences in slices over time to find quality issues

    Python Updated Nov 29, 2016
  • Does slice time correction, normalization, and smoothing on a functional image to prepare for connectivity analysis

    Python Updated Nov 23, 2016
  • uses SPM to realign and unwarp a functional image

    Python Updated Nov 19, 2016
  • use linear registration to find a mapping from functional images to structural images. also extracts brain from functionals

    Shell Updated Nov 18, 2016
  • smooths images using SPM12

    Python Updated Nov 18, 2016
  • uses regression to find and remove global signal of functional data

    Shell Updated Nov 11, 2016
  • SPM8 with MATLAB MCR 2010a

    Updated Nov 5, 2016
  • Computes a transformation of multi-shell diffusion weighted data to a set of Spherical Harmonic coefficients and outputs 4D Spherical Harmonic coefficient data. This is a first step in the Schneider Lab HDFT diffusion reconstruction process.

    Python Updated Nov 4, 2016
  • Run QA metrics (displacement, signal spikes) to create a quality assurance report (png) for an fMRI NIfTI using CNI/NIMS code from @rfdougherty.

    Python Updated Nov 2, 2016
  • Vistasoft (mrDiffusion) preprocessing pipeline for diffusion MR data

    Python Updated Oct 31, 2016
  • Matlab Compiler Runtime for v9.0.1 (R2016a)

    Shell Updated Oct 28, 2016
  • register structural images to standard templates

    Shell Updated Oct 24, 2016
  • Automated Fiber Quantification

    Matlab Updated Oct 24, 2016
  • dtiPrep quality assurance algorithm

    Python Updated Oct 24, 2016