• PRF analysis with the analyzePRF code

    MIT Updated Aug 2, 2018
  • SciTran DICOM Conversion Tool

    Python 1 Updated Aug 1, 2018
  • DICOM/PAR-REC conversion to nifti using Rorden's dcm2niix

    Shell 2 2 Updated Aug 1, 2018
  • Extract metadata from raw DICOM data from Siemens, Philips, or GE.

    Python 1 1 Updated Jul 31, 2018
  • Performs all, or any part of, the FreeSurfer cortical reconstruction process.

    Shell Updated Jul 20, 2018
  • Flywheel Gear that runs the AFQ processing pipeline

    Shell 1 Updated Jul 11, 2018
  • Gannet analysis of edited MRS data

    Shell Updated Jun 27, 2018
  • Uses fslmerge from FSL to merge datasets

    Shell Updated Jun 27, 2018
  • Classification of par/rec MR data from Philips

    Python Updated Jun 25, 2018
  • DICOM/PAR-REC conversion to nifti using Rorden's dcm2nii (v.4AUG14)

    Shell Updated Jun 16, 2018
  • Gear to generate files for afq browser

    Python Updated Jun 14, 2018
  • Split mutlti-shell dwi data into individual shells

    Matlab MIT Updated May 23, 2018
  • Python implementation of AFQ

    Updated May 14, 2018
  • Normalize DWI data

    Updated May 7, 2018
  • Generate montage from NIfTI

    Python Updated Apr 10, 2018
  • AFQ Pipeline Gear using Flywheel SDK

    Python Updated Mar 19, 2018
  • Calculate the RMSE between a tensor fit from dtiInit and the diffusion weighted imaging data

    Matlab 1 Apache-2.0 Updated Dec 18, 2017
  • FMRIB's Automated Segmentation Tool

    Shell 1 Updated Nov 30, 2017
  • Vistasoft (mrDiffusion) preprocessing pipeline for diffusion MR data

    Python Updated Nov 15, 2017
  • Run QA metrics (displacement, signal spikes) to create a quality assurance report (png) for an fMRI NIfTI using CNI/NIMS code

    Python 1 Updated Jun 21, 2017
  • Applies the retinotopy templates from Benson et al. (2014) PLOS Comput Biol to a FreeSurfer subject output.

    Shell 2 Updated Jun 20, 2017
  • Co-Register a functional to an anatomical.

    Python Updated Apr 12, 2017
  • AFNI-based brain warping based on D99 Macaque Atlas warp scripts

    Shell Updated Mar 9, 2017
  • FSL's Brain Extraction Tool (BET)

    Shell 1 Updated Mar 4, 2017
  • Reorient NIfTI data and metadata fields into RAS space

    Shell 1 Updated Dec 14, 2016
  • SPM8 with MATLAB MCR 2010a

    1 1 Updated Nov 5, 2016
  • Computes a transformation of multi-shell diffusion weighted data to a set of Spherical Harmonic coefficients and outputs 4D Spherical Harmonic coefficient data. This is a first step in the Schneider Lab HDFT diffusion reconstruction process.

    Python Updated Nov 4, 2016
  • Matlab Compiler Runtime for v9.0.1 (R2016a)

    Shell Updated Oct 28, 2016
  • Automated Fiber Quantification

    Matlab 1 Updated Oct 24, 2016
  • dtiPrep quality assurance algorithm

    Python 1 Apache-2.0 Updated Oct 25, 2016