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  • 🦠 Hi, I’m a professor in the Division of Infectious Diseases at the Johns Hopkins University School of Medicine
  • 🧬 I’m interested in leveraging bioinformatics and machine learning to improve public health outcomes
  • 🔬 My research group is looking for students and postdocs interested in network science, phylogenetics, or graph neural networks


  1. EPI-ClusT EPI-ClusT Public

    User-friendly distance-free method for defining clusters from phylogenetic trees

    Python 2

  2. Phylogeography Phylogeography Public

    This repository hosts code for an animated phylogeographic plot of HCV spread among PWID in India

    JavaScript 1

  3. sociospatial-baseline sociospatial-baseline Public

    This repository hosts data and code for an interactive sociospatial network visualization of baseline HIV/HCV prevalence among a cohort of people who inject drugs in New Delhi, India. Visit the lin…


  4. NGSTools NGSTools Public

    Forked from Czh3/NGSTools

    Next-Generation Sequencing(NGS) toolkits.


  5. SociospatialNet-Incidence SociospatialNet-Incidence Public

    This repository hosts code for an interactive sociospatial network visualization of HIV incidence among a cohort of PWID in New Delhi, India


  6. CoupledMCMC CoupledMCMC Public

    Forked from nicfel/CoupledMCMC

    Coupled MCMC for Beast2