Skip to content



Block or Report

Block or report scottgigante

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse


  1. PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

    Python 355 59

  2. MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

    Jupyter Notebook 234 79

  3. Tools for building and manipulating graphs in Python

    Python 29 13

  4. A collection of scripts and tools for loading, processing, and handling single cell data.

    Python 56 18

  5. m-phate Public

    Multislice PHATE for tensor embeddings

    Python 52 8

  6. picopore Public

    A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information

    Python 31 4

75 contributions in the last year

May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Mon Wed Fri
Activity overview

Contribution activity

May 2022

Created a pull request in openproblems-bio/openproblems that received 1 comment

require scprep v1.2

Removing temporary fork as the fixes have been merged to the main repo.

+2 −3 1 comment
Opened 3 other pull requests in 2 repositories
scottgigante/seurat 2 merged
theislab/anndata2ri 1 open
Reviewed 5 pull requests in 2 repositories
KrishnaswamyLab/scprep 4 pull requests
openproblems-bio/openproblems 1 pull request
1 contribution in private repositories May 1

Seeing something unexpected? Take a look at the GitHub profile guide.