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  1. PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

    Python 202 25

  2. MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

    Jupyter Notebook 137 54

  3. Tools for building and manipulating graphs in Python

    Python 12 4

  4. A collection of scripts and tools for loading, processing, and handling single cell data.

    Python 20 8

  5. Multislice PHATE for tensor embeddings

    Python 27 3

  6. A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information

    Python 30 4

1,443 contributions in the last year

Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec Jan Mon Wed Fri

Contribution activity

January 2020

Created a pull request in theislab/scanpy that received 1 comment

Update MAGIC API to 2.x

Changeset: added new MAGIC parameter knn_max updated MAGIC default parameters to match KrishnaswamyLab/MAGIC added tests to check MAGIC implementa…

+83 −14 1 comment

Created an issue in scipy/scipy that received 2 comments

API: Inconsistent naming of arguments in svd / svds / eig / eigs

The flag which specifies whether or not to return singular/eigenvectors alongside the singular/eigenvalues is extremely inconsistently named. scip…

2 comments

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