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  1. PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

    Python 355 59

  2. MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

    Jupyter Notebook 234 79

  3. Tools for building and manipulating graphs in Python

    Python 29 13

  4. A collection of scripts and tools for loading, processing, and handling single cell data.

    Python 56 18

  5. m-phate Public

    Multislice PHATE for tensor embeddings

    Python 52 8

  6. picopore Public

    A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information

    Python 31 4

75 contributions in the last year

May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Mon Wed Fri
Activity overview

Contribution activity

May 2022

Created a pull request in openproblems-bio/openproblems that received 1 comment

require scprep v1.2

Removing temporary fork as the fixes have been merged to the main repo.

+2 −3 1 comment
Opened 3 other pull requests in 2 repositories
scottgigante/seurat 2 merged
theislab/anndata2ri 1 open
Reviewed 5 pull requests in 2 repositories
KrishnaswamyLab/scprep 4 pull requests
openproblems-bio/openproblems 1 pull request
1 contribution in private repositories May 1

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