{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":332575100,"defaultBranch":"main","name":"contrast-agnostic-softseg-spinalcord","ownerLogin":"sct-pipeline","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-01-24T22:58:50.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/39176803?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1713305642.0","currentOid":""},"activityList":{"items":[{"before":"c0cc95d59eca999386f94b62381535e1aac0df45","after":"646b13eafab23d116820a931d042ab91e91e852f","ref":"refs/heads/nk/new-model","pushedAt":"2024-05-14T21:21:29.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"add key/value pairs for plain and resEncM nnunet models","shortMessageHtmlLink":"add key/value pairs for plain and resEncM nnunet models"}},{"before":"ad34416c9e80306c225af2594e0246d55a4ecaf0","after":"4408c998b1826490535d5648e56e403d89f74569","ref":"refs/heads/nk/drac","pushedAt":"2024-04-29T14:22:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"add if condition for creating results/ on SLURM_TMPDIR","shortMessageHtmlLink":"add if condition for creating results/ on SLURM_TMPDIR"}},{"before":"e6af51d750dce3003da6d7983e58496f39ea6709","after":"ad34416c9e80306c225af2594e0246d55a4ecaf0","ref":"refs/heads/nk/drac","pushedAt":"2024-04-25T21:32:55.000Z","pushType":"push","commitsCount":11,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"necessary updates to train with 7 datasets","shortMessageHtmlLink":"necessary updates to train with 7 datasets"}},{"before":"56384fe93ea4b6ef29412fa5b6cf1ebec9632416","after":"c0cc95d59eca999386f94b62381535e1aac0df45","ref":"refs/heads/nk/new-model","pushedAt":"2024-04-25T18:39:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"store the basename of filename in the df before saving","shortMessageHtmlLink":"store the basename of filename in the df before saving"}},{"before":"a2bbb5a0e644b9781539e6a0a811011b43c89cc8","after":"56384fe93ea4b6ef29412fa5b6cf1ebec9632416","ref":"refs/heads/nk/new-model","pushedAt":"2024-04-24T20:35:39.000Z","pushType":"push","commitsCount":9,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"minor improvements/fixes","shortMessageHtmlLink":"minor improvements/fixes"}},{"before":"9db057fd27d9c36510908a7ac131df5dc46ba53a","after":"a2bbb5a0e644b9781539e6a0a811011b43c89cc8","ref":"refs/heads/nk/new-model","pushedAt":"2024-04-23T16:33:53.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"minor fixes and improvements","shortMessageHtmlLink":"minor fixes and improvements"}},{"before":"d85122388707fc187de8cf095a34ae2e77cc7210","after":"9db057fd27d9c36510908a7ac131df5dc46ba53a","ref":"refs/heads/nk/new-model","pushedAt":"2024-04-23T16:12:11.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"add script for generating QC reports for datasets' original GT labels","shortMessageHtmlLink":"add script for generating QC reports for datasets' original GT labels"}},{"before":"e79e106c2f97afe079fefa9cc168b71e03f83838","after":"d85122388707fc187de8cf095a34ae2e77cc7210","ref":"refs/heads/nk/new-model","pushedAt":"2024-04-16T20:01:40.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"explicitly log number of images per contrast per split to datalist json","shortMessageHtmlLink":"explicitly log number of images per contrast per split to datalist json"}},{"before":"8f5774bb60091bdc571d795f4b2cc76dd09cde55","after":"e79e106c2f97afe079fefa9cc168b71e03f83838","ref":"refs/heads/nk/new-model","pushedAt":"2024-04-16T02:58:36.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"minor changes to compare new monai models","shortMessageHtmlLink":"minor changes to compare new monai models"}},{"before":"da30cd9efd4433c99064d0c64d2b15309e360b4f","after":"e6af51d750dce3003da6d7983e58496f39ea6709","ref":"refs/heads/nk/drac","pushedAt":"2024-04-12T21:42:32.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"set strategy to ddp by default; -1 to use all gpus; log strategy and world_size","shortMessageHtmlLink":"set strategy to ddp by default; -1 to use all gpus; log strategy and …"}},{"before":"190420c5537c213b05c6991fdd394fa550d33b2d","after":"da30cd9efd4433c99064d0c64d2b15309e360b4f","ref":"refs/heads/nk/drac","pushedAt":"2024-04-11T03:37:26.000Z","pushType":"push","commitsCount":10,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"minor fixes","shortMessageHtmlLink":"minor fixes"}},{"before":"e2d892a4078d33eaf25ec23692e687adb9042cc1","after":"df2d76b7f003b24f280c4a48ecc32a87a994def0","ref":"refs/heads/nk/midl-short","pushedAt":"2024-04-10T21:12:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"update title of abs_csa_error figure","shortMessageHtmlLink":"update title of abs_csa_error figure"}},{"before":"53c6f76eee26fe03329fd5798faa9257a446e6e2","after":"8f5774bb60091bdc571d795f4b2cc76dd09cde55","ref":"refs/heads/nk/new-model","pushedAt":"2024-04-10T15:41:59.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"increase max_epochs to 250; change seed to 50","shortMessageHtmlLink":"increase max_epochs to 250; change seed to 50"}},{"before":"3a5002a8a60fb6a33336bb9298b53282144d8405","after":"53c6f76eee26fe03329fd5798faa9257a446e6e2","ref":"refs/heads/nk/new-model","pushedAt":"2024-04-09T21:33:14.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"create datasplits folder for each new dataset/contrast","shortMessageHtmlLink":"create datasplits folder for each new dataset/contrast"}},{"before":"8b84c21d7d0c8f6d3793ba32d475a2cf80ce8e70","after":"3a5002a8a60fb6a33336bb9298b53282144d8405","ref":"refs/heads/nk/new-model","pushedAt":"2024-04-09T21:20:53.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"add timestamp to log file","shortMessageHtmlLink":"add timestamp to log file"}},{"before":"450858ee5736b728a5c695ae8fe4d5024320f36f","after":"190420c5537c213b05c6991fdd394fa550d33b2d","ref":"refs/heads/nk/drac","pushedAt":"2024-04-08T16:50:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"add %S to timestamp","shortMessageHtmlLink":"add %S to timestamp"}},{"before":"c7442744577ba180ac5b79cb7443ef961cc76c43","after":"450858ee5736b728a5c695ae8fe4d5024320f36f","ref":"refs/heads/nk/drac","pushedAt":"2024-04-07T02:36:24.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"switch to numpy seed from random_state","shortMessageHtmlLink":"switch to numpy seed from random_state"}},{"before":null,"after":"c7442744577ba180ac5b79cb7443ef961cc76c43","ref":"refs/heads/nk/drac","pushedAt":"2024-04-06T18:08:44.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"minor fixes/enhancements for DRAC training","shortMessageHtmlLink":"minor fixes/enhancements for DRAC training"}},{"before":"00bde8c8eae8ffb532cd151b57e011337bbc4c82","after":"e2d892a4078d33eaf25ec23692e687adb9042cc1","ref":"refs/heads/nk/midl-short","pushedAt":"2024-04-05T18:36:16.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"add unetr and swinptr models for comparison","shortMessageHtmlLink":"add unetr and swinptr models for comparison"}},{"before":"4e1d3d54df0f07c669dd04dcf1740b47763252cc","after":"8b84c21d7d0c8f6d3793ba32d475a2cf80ce8e70","ref":"refs/heads/nk/new-model","pushedAt":"2024-04-04T18:32:46.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"minor code improvements","shortMessageHtmlLink":"minor code improvements"}},{"before":"272decd4cb627a6f25f97310fe14bb00a931f3b5","after":"4e1d3d54df0f07c669dd04dcf1740b47763252cc","ref":"refs/heads/nk/new-model","pushedAt":"2024-04-04T14:59:31.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"add code to generate plots for slicewise Dice","shortMessageHtmlLink":"add code to generate plots for slicewise Dice"}},{"before":"d842f3845f72dc27df5ced5376e5c94b03b8a4e7","after":"272decd4cb627a6f25f97310fe14bb00a931f3b5","ref":"refs/heads/nk/new-model","pushedAt":"2024-04-04T05:06:36.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"add script for generating perslice CSA violin plots","shortMessageHtmlLink":"add script for generating perslice CSA violin plots"}},{"before":"2d5af071d1e3dac2454e9295cd8221a107dbe646","after":"00bde8c8eae8ffb532cd151b57e011337bbc4c82","ref":"refs/heads/nk/midl-short","pushedAt":"2024-04-02T13:42:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"update code to add option for specifying padding mode at test-time transforms","shortMessageHtmlLink":"update code to add option for specifying padding mode at test-time tr…"}},{"before":"5c8ab618238494dec9ead61ace48293e66196216","after":"2d5af071d1e3dac2454e9295cd8221a107dbe646","ref":"refs/heads/nk/midl-short","pushedAt":"2024-03-30T22:13:50.000Z","pushType":"push","commitsCount":10,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"comment out ensembling","shortMessageHtmlLink":"comment out ensembling"}},{"before":"9f527fd1d1dc11106ea8b20ff513d9ef0bd3c093","after":null,"ref":"refs/heads/sb/create-softseg-bin-gt","pushedAt":"2024-03-26T20:08:58.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"sandrinebedard","name":"Sandrine Bédard","path":"/sandrinebedard","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/71230552?s=80&v=4"}},{"before":"59e6229a32fa68b20d8fae6e4cb73cd07a7a243b","after":"32ef5c9d541bb779453cca6fc8c25b768bc2c9b1","ref":"refs/heads/main","pushedAt":"2024-03-26T20:08:44.000Z","pushType":"pr_merge","commitsCount":19,"pusher":{"login":"sandrinebedard","name":"Sandrine Bédard","path":"/sandrinebedard","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/71230552?s=80&v=4"},"commit":{"message":"Merge pull request #105 from sct-pipeline/sb/create-softseg-bin-gt\n\nUpdate preprocessing script for spine-generic with new naming convention","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2203149390\" data-permission-text=\"Title is private\" data-url=\"https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/issues/105\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/sct-pipeline/contrast-agnostic-softseg-spinalcord/pull/105/hovercard\" href=\"https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/pull/105\">#105</a> from sct-pipeline/sb/create-softseg-bin-gt"}},{"before":"4641fc7680924e3250cd358e1d35125cd97fa59a","after":"9f527fd1d1dc11106ea8b20ff513d9ef0bd3c093","ref":"refs/heads/sb/create-softseg-bin-gt","pushedAt":"2024-03-26T20:08:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sandrinebedard","name":"Sandrine Bédard","path":"/sandrinebedard","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/71230552?s=80&v=4"},"commit":{"message":"remove TODO\n\nCo-authored-by: Jan Valosek <39456460+valosekj@users.noreply.github.com>","shortMessageHtmlLink":"remove TODO"}},{"before":"1111dd4a01f59c5049725fe71b93ab7d481428ac","after":"4641fc7680924e3250cd358e1d35125cd97fa59a","ref":"refs/heads/sb/create-softseg-bin-gt","pushedAt":"2024-03-26T20:07:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sandrinebedard","name":"Sandrine Bédard","path":"/sandrinebedard","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/71230552?s=80&v=4"},"commit":{"message":"fix typo\n\nCo-authored-by: Jan Valosek <39456460+valosekj@users.noreply.github.com>","shortMessageHtmlLink":"fix typo"}},{"before":"ba82a301b637c95d407b3f298da468789ba0ab37","after":"1111dd4a01f59c5049725fe71b93ab7d481428ac","ref":"refs/heads/sb/create-softseg-bin-gt","pushedAt":"2024-03-22T19:12:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sandrinebedard","name":"Sandrine Bédard","path":"/sandrinebedard","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/71230552?s=80&v=4"},"commit":{"message":"Update SCT version used for preprocessing","shortMessageHtmlLink":"Update SCT version used for preprocessing"}},{"before":"3cb37197d0884bceb2b955c4498e1d392b379a9d","after":"d842f3845f72dc27df5ced5376e5c94b03b8a4e7","ref":"refs/heads/nk/new-model","pushedAt":"2024-03-21T16:33:26.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"naga-karthik","name":"Naga Karthik Enamundram","path":"/naga-karthik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53445351?s=80&v=4"},"commit":{"message":"keep perlevel csa for std; add perslice computation for abs. csa error","shortMessageHtmlLink":"keep perlevel csa for std; add perslice computation for abs. csa error"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAESeqbzgA","startCursor":null,"endCursor":null}},"title":"Activity · sct-pipeline/contrast-agnostic-softseg-spinalcord"}