diff --git a/scanpy/external/tl/_palantir.py b/scanpy/external/tl/_palantir.py index ba437d5f52..52c0d1f018 100644 --- a/scanpy/external/tl/_palantir.py +++ b/scanpy/external/tl/_palantir.py @@ -207,7 +207,7 @@ def palantir( # Diffusion maps dm_res = run_diffusion_maps( - data_df=df, + df, n_components=n_components, knn=knn, alpha=alpha, @@ -292,7 +292,7 @@ def palantir_results( ms_data = pd.DataFrame(adata.obsm[ms_data], index=adata.obs_names) pr_res = run_palantir( - ms_data=ms_data, + ms_data, early_cell=early_cell, terminal_states=terminal_states, knn=knn,