From e78701ce5d3ece33688319e0f85a51b02dd06769 Mon Sep 17 00:00:00 2001
From: Gregor Sturm <mail@gregor-sturm.de>
Date: Wed, 30 Jun 2021 12:09:03 +0200
Subject: [PATCH] Ensure compatibility with latest dandelion version

---
 pyproject.toml   | 2 +-
 scirpy/io/_io.py | 1 -
 2 files changed, 1 insertion(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index efede3d32..91e462be5 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -54,7 +54,7 @@ test = [
     'black'
 ]
 dandelion = [
-    'sc-dandelion',
+    'sc-dandelion>=0.1.3',
     'adjusttext', # see https://github.com/zktuong/dandelion/issues/55
 ]
 doc = [
diff --git a/scirpy/io/_io.py b/scirpy/io/_io.py
index ba38fd334..d4e25fae6 100644
--- a/scirpy/io/_io.py
+++ b/scirpy/io/_io.py
@@ -654,7 +654,6 @@ def to_dandelion(adata: AnnData):
                     "sequence_id": f"{tmp_cell.cell_id}_contig_{i}",
                 }
             )
-            chain["umi_count"] = chain.pop("duplicate_count")
             contig_dicts[chain["sequence_id"]] = chain
 
     data = pd.DataFrame.from_dict(contig_dicts, orient="index")