diff --git a/.github/workflows/run-linux-cuda.yml b/.github/workflows/run-linux-cuda.yml index e86dea44..29ffe328 100644 --- a/.github/workflows/run-linux-cuda.yml +++ b/.github/workflows/run-linux-cuda.yml @@ -13,7 +13,7 @@ jobs: runs-on: [self-hosted, Linux, X64, CUDA] container: - image: martinkim0/scvi-tools:ubuntu-latest-mamba-latest-python-3.11-cuda-11 + image: martinkim0/scvi-tools:py3.11-cu11 options: --user root --gpus all steps: @@ -22,11 +22,15 @@ jobs: - name: Install dependencies run: | - pip install -U scvi-tools[tutorials] + python -m pip install -U scvi-tools[tutorials] - name: Install nbconvert run: | - pip install -U nbconvert + python -m pip install -U jupyter ipykernel nbconvert + + - name: Install kernel + run: | + python -m ipykernel install - name: Run notebook run: |