From 7fc87e262ac1e3b2896abb70790798c7b11ac834 Mon Sep 17 00:00:00 2001 From: Luca Marconato Date: Mon, 27 Oct 2025 20:09:09 +0100 Subject: [PATCH] add visium hd test datasets --- .github/workflows/prepare_test_data.yaml | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/.github/workflows/prepare_test_data.yaml b/.github/workflows/prepare_test_data.yaml index aca5b2f6..29a7522c 100644 --- a/.github/workflows/prepare_test_data.yaml +++ b/.github/workflows/prepare_test_data.yaml @@ -21,7 +21,8 @@ jobs: mkdir -p ./data cd ./data - # the datasets are licensed as CC BY 4.0, as shown here + # ------- + # the Xenium datasets are licensed as CC BY 4.0, as shown here # https://www.10xgenomics.com/support/software/xenium-onboard-analysis/latest/resources/xenium-example-data # 10x Genomics Xenium 2.0.0 @@ -44,6 +45,15 @@ jobs: # 10x Genomics Xenium 4.0.0 (v1+Protein) Human kidney, multimodal cell segmentation curl -O https://cf.10xgenomics.com/samples/xenium/4.0.0/Xenium_V1_Protein_Human_Kidney_tiny/Xenium_V1_Protein_Human_Kidney_tiny_outs.zip + # ------- + # the Visium HD dataset is licensed as CC BY 4.0, as shown here + # https://www.10xgenomics.com/support/software/space-ranger/latest/resources/visium-hd-example-data + + # 10x Genomics Visium HD 4.0.1 3' Mouse Brain + curl -O https://cf.10xgenomics.com/samples/spatial-exp/4.0.1/Visium_HD_Tiny_3prime_Dataset/Visium_HD_Tiny_3prime_Dataset_outs.zip + + # ------- + # we received written permission to make the following dataset public and integrate it in the CI system of spatialdata-io # Spatial Genomics seqFISH v2 curl -O https://s3.embl.de/spatialdata/raw_data/seqfish-2-test-dataset.zip