diff --git a/.gitignore b/.gitignore index 32771d1c..8e8d30c7 100644 --- a/.gitignore +++ b/.gitignore @@ -36,5 +36,8 @@ node_modules/ .code-workspace # test datasets (e.g. Xenium ones) +# symlinks +data +# data folder data/ tests/data diff --git a/src/spatialdata_io/readers/visium.py b/src/spatialdata_io/readers/visium.py index 76a41898..a2f84ede 100644 --- a/src/spatialdata_io/readers/visium.py +++ b/src/spatialdata_io/readers/visium.py @@ -253,7 +253,7 @@ def visium( rgb=None, ) - return SpatialData(images=images, shapes=shapes, table=table) + return SpatialData(images=images, shapes=shapes, tables={"table": table}) def _read_image(image_file: Path, imread_kwargs: dict[str, Any]) -> Any: