diff --git a/examples/index.md b/examples/index.md index 4b7b1aa..84f4cc7 100644 --- a/examples/index.md +++ b/examples/index.md @@ -1,9 +1,23 @@ # Examples -Worked examples showing `spatialdata-plot` on real spatial-omics datasets. -Use these to see how the API composes on data you'd actually analyse. +Worked examples on real datasets you'd actually analyse. + +::::{grid} 1 2 2 2 +:gutter: 3 + +:::{grid-item-card} Visium mouse brain +:link: visium_mouse_brain +:link-type: doc +:img-top: visium_mouse_brain.png + +Render H&E tissue, overlay spots, color by gene expression and by cluster, +and finish with a publication-style figure. +::: + +:::: ```{toctree} +:hidden: :maxdepth: 1 visium_mouse_brain diff --git a/examples/visium_mouse_brain.png b/examples/visium_mouse_brain.png new file mode 100644 index 0000000..a1f80e5 Binary files /dev/null and b/examples/visium_mouse_brain.png differ diff --git a/tutorials/getting_started.png b/tutorials/getting_started.png new file mode 100644 index 0000000..68600f1 Binary files /dev/null and b/tutorials/getting_started.png differ diff --git a/tutorials/index.md b/tutorials/index.md index 3f95761..7fe082f 100644 --- a/tutorials/index.md +++ b/tutorials/index.md @@ -1,10 +1,23 @@ # Tutorials -End-to-end workflows demonstrating `spatialdata-plot` on real spatial-omics -datasets. Each tutorial walks through loading a published dataset, layering -spatial elements, and styling a publication-ready figure. +Entry-point material for learning the API on synthetic data. + +::::{grid} 1 2 2 2 +:gutter: 3 + +:::{grid-item-card} Getting started +:link: getting_started +:link-type: doc +:img-top: getting_started.png + +The fluent `.pl` API, layering, and styling on the in-memory `blobs` +dataset. Ideal first read. +::: + +:::: ```{toctree} +:hidden: :maxdepth: 1 getting_started