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seabbs/README.md

Hi there 👋

I'm an infectious disease researcher interested in real-time analysis

NOW
BIO
  • 🏢 I'm currently working at London School of Hygiene and Tropical Medicine
  • 📜 I did my PhD at the University of Bristol (2019)
  • ⚙️ I use daily: R, stan
  • 🏗️ I like to perform analysis using novel models on interesting data and generalise those approaches into software 📦s
  • 🌍 I'm mostly active within the R Community
  • 🌱 Learning all about Python and Visual studio code
  • 💬 Ping me about statistical modelling of infectious diseases, real-time analysis of infectious diseases, and estimating the effective reproduction number
  • 📫 Reach me: sam.abbott@lshtm.ac.uk

Pinned

  1. PhD thesis submitted to the University of Bristol. Title: Modelling BCG vaccination in the UK: What is the impact of changing policy?

    C++ 8 1

  2. Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

    HTML 49 15

  3. Population-level infectious disease modelling as an extension of brms.

    R 2 1

  4. An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisa…

    R 28 13

  5. National and subnational estimates of the time-varying reproduction number for Covid-19

    R 26 8

  6. Forked from jbracher/branching_process_delta

    A simple branching process model for delta and non-delta variant cases of COVID-19 in Germany

    R 1

6,167 contributions in the last year

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