Permalink
Find file
Fetching contributors…
Cannot retrieve contributors at this time
376 lines (340 sloc) 16.2 KB
@article{datalimited,
title = {datalimited: Stock assessment methods for data-limited fisheries},
author = {Sean C. Anderson and Jamie Afflerbach and Andrew B. Cooper and Mark Dickey-Collas and Olaf P. Jensen and Kristin M. Kleisner and Catherine Longo and Giacomo Chato Osio and Daniel Ovando and Carolina Minte-Vera and Coilin Minto and Iago Mosqueira and Andrew A. Rosenberg and Elizabeth R. Selig and James T. Thorson and Jessica C. Walsh},
year = {2016},
note = {R package version 0.0.2},
journal = {ignore},
number = {ignore},
url = {https://github.com/datalimited/datalimited},
}
@article{anderson2016a,
title = {Black-swan events in animal populations},
volume = {In review},
journal = {In review},
author = {Anderson, S. C. and Branch, T. A. and Cooper, A. B. and Dulvy, N. K.},
year = {2016},
}
@article{rosenberg2016,
title = {Applying a new ensemble approach to estimating stock status of marine fisheries around the world},
volume = {In review},
journal = {In review},
author = {Rosenberg, A. A. and Kleisner, K. M. and Afflerbach, J. and Anderson, S. C. and Dickey-Collas, M. and Cooper, A. B. and Fogarty, M. J. and Fulton, E. A. and Gutiérrez, N. L. and Hyde, K. J. W. and Jardim, E. and Jensen, O. P. and Kristiansen, T. and Longo, C. and Minte-Vera, C. V. and Minto, C. and Mosqueira, I. and Osio, G. C. and Ovando, D. and Selig, E. R. and Thorson, J. T. and Walsh, J. C. and Ye, Y.},
year = {2016}
}
@article{anderson2016,
title = {Improving estimates of population status and trend with superensemble models},
volume = {In press},
journal = {Fish and Fisheries},
author = {Anderson, Sean C. and Cooper, Andrew B. and Jensen, O P and Minto, C and Thorson, J T and Walsh, J C and Dickey-Collas, M and Kleisner, Kristin M. and Longo, Catherine and Osio, Giacomo Chato and Ovando, Daniel and Mosqueira, Iago and Rosenberg, Andrew A. and Selig, Elizabeth R.},
year = {2016}
}
@Article{ trebilco2016,
author = {R Trebilco and N K Dulvy and Sean C Anderson and Anne K Salomon},
volume = {283},
issue = {1833},
journal = {Proceedings of the Royal Society B: Biological Sciences},
title = {The paradox of inverted biomass pyramids in kelp forest fish communities},
year = {2016},
pages = {20160816},
doi = {10.1098/rspb.2016.0816},
oa = {FALSE},
}
@article{artelle2016,
title = {Ecology of conflict: marine food supply affects human-wildlife interactions on land},
volume = {6},
journal = {Scientific Reports},
doi = {10.1038/srep25936},
author = {Artelle, Kyle A. and Anderson, Sean C. and Reynolds, John D. and Cooper, Andrew B. and Paquet, Paul C. and Darimont, Chris T.},
year = {2016},
pages = {25936},
pdf = {http://www.nature.com/articles/srep25936.pdf},
oa = {TRUE},
}
@article{kuriyama2016,
series = {Growth: theory, estimation, and application in fishery stock assessment models},
title = {An empirical weight-at-age approach reduces estimation bias compared to modeling parametric growth in integrated, statistical stock assessment models when growth is time varying},
volume = {180},
doi = {10.1016/j.fishres.2015.09.007},
altm = {TRUE},
journal = {Fisheries Research},
author = {Kuriyama, Peter T. and Ono, Kotaro and Hurtado-Ferro, Felipe and Hicks, Allan C. and Taylor, Ian G. and Licandeo, Roberto R. and Johnson, Kelli F. and Anderson, Sean C. and Monnahan, Cole C. and Rudd, Merrill B. and Stawitz, Christine C. and Valero, Juan L.},
year = {2016},
pdf = {Kuriyama_etal_2016_empirical.pdf},
pages = {119--127}
}
@article{monnahan2016,
series = {Growth: theory, estimation, and application in fishery stock assessment models},
title = {The effect of length bin width on growth estimation in integrated age-structured stock assessments},
volume = {180},
doi = {10.1016/j.fishres.2015.11.002},
altm = {TRUE},
journal = {Fisheries Research},
author = {Monnahan, Cole C. and Ono, Kotaro and Anderson, Sean C. and Rudd, Merrill B. and Hicks, Allan C. and Hurtado-Ferro, Felipe and Johnson, Kelli F. and Kuriyama, Peter T. and Licandeo, Roberto R. and Stawitz, Christine C. and Taylor, Ian G. and Valero, Juan L.},
year = {2016},
pdf = {Monnahan_etal_2016_binwidth.pdf},
pages = {103--112}
}
@article{orzechowski2015,
title = {Marine extinction risk shaped by trait-environment interactions over 500 million years},
volume = {21},
doi = {10.1111/gcb.12963},
number = {10},
journal = {Global Change Biology},
author = {Orzechowski, Emily A. and Lockwood, Rowan and Byrnes, Jarrett E. K. and Anderson, Sean C. and Finnegan, Seth and Finkel, Zoe V. and Harnik, Paul G. and Lindberg, David R. and Liow, Lee Hsiang and Lotze, Heike K. and McClain, Craig R. and McGuire, Jenny L. and O'Dea, Aaron and Pandolfi, John M. and Simpson, Carl and Tittensor, Derek P.},
year = {2015},
pages = {3595--3607},
altm = {TRUE},
pdf = {Orzechowski_etal_2015_paleometa.pdf}
}
@article{boudreau2015,
title = {Top-down and bottom-up forces interact at thermal range extremes on American lobster},
volume = {84},
doi = {10.1111/1365-2656.12322},
number = {3},
journal = {Journal of Animal Ecology},
author = {Boudreau, Stephanie A. and Anderson, Sean C. and Worm, Boris},
year = {2015},
pdf = {Boudreau_etal_2015_lobster.pdf},
pages = {840--850}
}
@article{anderson2015,
title = {Portfolio conservation of metapopulations under climate change},
volume = {25},
doi = {10.1890/14-0266.1},
number = {2},
journal = {Ecological Applications},
author = {Anderson, Sean C. and Moore, Jonathan W. and McClure, Michelle M. and Dulvy, Nicholas K. and Cooper, Andrew B.},
year = {2015},
pages = {559--572},
altm = {TRUE},
pdf = {Anderson_etal_2015_salmonportfolios.pdf}
}
@article{finnegan2015,
title = {Paleontological baselines for evaluating extinction risk in the modern oceans},
volume = {348},
doi = {10.1126/science.aaa6635},
number = {6234},
journal = {Science},
author = {Finnegan, Seth and Anderson, Sean C. and Harnik, Paul G. and Simpson, Carl and Tittensor, Derek P. and Byrnes, Jarrett E. and Finkel, Zoe V. and Lindberg, David R. and Liow, Lee Hsiang and Lockwood, Rowan and Lotze, Heike K. and McClain, Craig R. and McGuire, Jenny L. and O'Dea, Aaron and Pandolfi, John M.},
year = {2015},
altm = {TRUE},
pages = {567--570},
}
@Article{ hurtado-ferro2015,
author = {Felipe Hurtado-Ferro and Cody S. Szuwalski and Juan L. Valero and Sean C. Anderson and Curry J. Cunningham and Kelli F. Johnson and Roberto R. Licandeo and Carey R. McGilliard and Cole C. Monnahan and Melissa L. Muradian and Kotaro Ono and Katyana A. Vert-Pre and Athol R. Whitten and Andre E. Punt},
journal = {ICES Journal of Marine Sciences},
number = {1},
volume = {72},
pages = {99--110},
title = {Looking in the rear-view mirror: bias and retrospective patterns in integrated, age-structured stock assessment models},
year = {2015},
doi = {10.1093/icesjms/fsu198},
pdf = {Hurtado-Ferro_etal_2014_retrospective.pdf}
}
@Article{ farmer2014,
author = {Farmer, Robert G. and Leonard, Marty L. and Mills Flemming, Joanna E. and Anderson, Sean C.},
doi = {10.1002/ece3.1101},
journal = {Ecology and Evolution},
volume = {4},
number = {12},
pages = {2563--2576},
title = {Observer aging and long-term avian survey data quality},
year = {2014},
month = {5},
oa = {TRUE},
altm = {TRUE},
pdf = {http://onlinelibrary.wiley.com/doi/10.1002/ece3.1101/pdf},
note = {[National Geographic news story](http://news.nationalgeographic.com/news/2014/08/140805-aging-birders-breeding-bird-survey-volunteers-science/)}
}
@Article{ anderson2014a,
author = {Anderson, , Sean C and Monnahan, , Cole C and Johnson, , Kelli F and Ono, , Kotaro and Valero, , Juan L},
doi = {10.1371/journal.pone.0092725},
journal = {PLOS ONE},
number = {4},
pages = {e92725},
title = {ss3sim: An R package for fisheries stock assessment simulation with Stock Synthesis},
volume = {9},
year = {2014},
month = {4},
note = {([R package](http://cran.r-project.org/web/packages/ss3sim/index.html), [code](https://github.com/ss3sim/ss3sim), [vignette](https://dl.dropboxusercontent.com/u/254940/ss3sim-vignette.pdf))},
oa = {TRUE},
altm = {TRUE},
pdf = {http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0092725&representation=PDF}
}
@Article{ johnson2015,
author = {Johnson, Kelli F. and Monnahan, Cole C. and McGilliard, Carey R. and Vert-pre, Katyana A. and Anderson, Sean C. and Cunningham, Curry J. and Hurtado-Ferro, Felipe and Licandeo, Roberto R. and Muradian, Melissa L. and Ono, Kotaro and Szuwalski, Cody S. and Valero, Juan L. and Whitten, Athol R. and Punt, A. E.},
doi = {10.1093/icesjms/fsu055},
journal = {ICES Journal of Marine Science},
title = {Time-varying natural mortality in fisheries stock assessment models: identifying a default approach},
year = {2014},
month = {4},
pages = {137--150},
number = {1},
volume = {72},
pdf = {http://icesjms.oxfordjournals.org/content/early/2014/04/09/icesjms.fsu055.full.pdf?keytype=ref&ijkey=NEXmZIkz3289u3z}
}
@Article{ ono2015,
title = {The importance of length and age composition data in statistical age-structured models for marine species},
volume = {72},
doi = {10.1093/icesjms/fsu007},
number = {1},
journal = {ICES Journal of Marine Science},
author = {Ono, Kotaro and Licandeo, Roberto and Muradian, Melissa L. and Cunningham, Curry J. and Anderson, Sean C. and Hurtado-Ferro, Felipe and Johnson, Kelli F. and McGilliard, Carey R. and Monnahan, Cole C. and Szuwalski, Cody S. and Valero, Juan L. and Vert-Pre, Katyana A. and Whitten, Athol R. and Punt, Andr{\'e} E.},
year = {2015},
pages = {31--43},
altm = {FALSE},
pdf = {http://icesjms.oxfordjournals.org/content/early/2014/02/20/icesjms.fsu007.full.pdf}
}
@Article{ oregan2014,
author = {O'Regan, Sacha M. and Palen, Wendy J. and Anderson, Sean C.},
doi = {10.1890/13-0916.1},
journal = {Ecology},
number = {4},
pages = {845--855},
title = {Climate warming mediates negative impacts of rapid pond drying for three amphibian species},
volume = {95},
number = {4},
month = {4},
year = {2014},
oa = {TRUE},
altm = {TRUE},
note = {[Cover Article](http://www.esajournals.org/userimages/ContentEditor/1398099670397/i0012-9658-95-4-cov.pdf)},
f1000 = {http://f1000.com/prime/718158688?bd=1},
pdf = {http://www.esajournals.org/doi/pdf/10.1890/13-0916.1}
}
@Article{favaro2013,
author = {B Favaro and D C Braun and {Earth2Ocean Research Derby}},
doi = {10.4033/iee.2013.6.9.n},
journal = {Ideas in Ecology and Evolution},
pages = {40--46},
title = {Research Derby: A pressure cooker for creative collaborative science. Ideas in Ecology and Evolution},
volume = {6},
year = {2013},
oa = {TRUE},
pdf = {http://library.queensu.ca/ojs/index.php/IEE/article/download/4931/4899}
}
@Article{ anderson2013,
author = {Sean C Anderson and Andrew B Cooper and Nicholas K Dulvy},
doi = {10.1111/2041-210X.12093},
journal = {Methods in Ecology and Evolution},
number = {10},
pages = {971--981},
title = {Ecological prophets: Quantifying metapopulation portfolio effects},
volume = {4},
year = {2013},
month = {8},
pdf = {Anderson_etal_2013_ecological_prophets_with_SOM.pdf},
som = {Anderson_etal_2013_ecological_prophets_SOM.pdf},
code = {[R package](https://github.com/seananderson/ecofolio)},
altm = {TRUE}
}
@Article{ artelle2013,
author = {Artelle, , Kyle A. and Anderson, , Sean C. and Cooper, , Andrew B. and Paquet, , Paul C. and Reynolds, , John D. and Darimont, , Chris T.},
doi = {10.1371/journal.pone.0078041},
journal = {PLOS ONE},
number = {11},
pages = {e78041},
title = {Confronting uncertainty in wildlife management: performance of grizzly bear management},
volume = {8},
year = {2013},
month = {11},
oa = {TRUE},
pdf = {http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0078041&representation=PDF},
altm = {TRUE}
}
@Article{phillis2013,
Author = {Phillis\*, Corey C. and O'Regan\*, Sacha M. and Green\*, Stephanie J. and Bruce\*, Jeanette E.B. and Anderson, Sean C. and Linton, Jennifer N. and Earth2Ocean Research Derby and Favaro, Brett},
Journal = {Conservation Letters},
Number = {2},
Pages = {98--106},
Title = {Multiple pathways to conservation success},
doi = {10.1111/j.1755-263X.2012.00294.x},
Volume = {6},
pdf = {Phillis_etal_2012_Multiple_pathways_to_conservation_success.pdf},
altm = {TRUE},
note = {(\**Authors contributed equally, listed in reverse alphabetical order*)},
Year = {2013}}
@Article{ harnik2012,
author = {Paul G. Harnik and Heike K. Lotze and Sean C. Anderson and Zoe V. Finkel and Seth Finnegan and David R. Lindberg and Lee Hsiang Liow and Rowan Lockwood and Craig R. McClain and Jenny L. McGuire and Aaron O'Dea and John M. Pandolfi and Carl Simpson and Derek P. Tittensor},
journal = {Trends in Ecology and Evolution},
number = {11},
pages = {608--617},
title = {Extinctions in ancient and modern seas},
volume = {27},
year = {2012},
doi = {10.1016/j.tree.2012.07.010},
month = {11},
pdf = {Harnik_etal_2012_Extinctions_in_ancient_and_modern_seas.pdf},
altm = {TRUE}
}
@Article{ anderson2012,
author = {Anderson, Sean C. and Branch, Trevor A. and Ricard, Daniel and Lotze, Heike K.},
doi = {10.1093/icesjms/fss105},
journal = {ICES Journal of Marine Science},
number = {8},
pages = {1491--1500},
title = {Assessing global marine fishery status with a revised dynamic catch-based method and stock-assessment reference points},
volume = {69},
month = {6},
year = {2012},
pdf = {http://icesjms.oxfordjournals.org/cgi/reprint/fss105?ijkey=pFRzMGEDycomI3X&keytype=ref},
}
@Article{ anderson2011a,
author = {Anderson, Sean C and Farmer, Robert G and Ferretti, Francesco and Houde, Aimee Lee S and Hutchings, Jeffrey A},
doi = {10.1525/bio.2011.61.7.8},
journal = {BioScience},
number = {7},
pages = {538--549},
title = {Correlates of vertebrate extinction risk in Canada},
volume = {61},
year = {2011},
pdf = {Anderson_etal_2011_BioScience_with_supplement.pdf}
}
@Article{ anderson2011,
author = {Anderson, , Sean C. and Mills Flemming, , Joanna and Watson, , Reg and Lotze, , Heike K},
doi = {10.1111/j.1467-2979.2010.00397.x},
journal = {Fish and Fisheries},
number = {3},
pages = {317--339},
title = {Serial exploitation of global sea cucumber fisheries},
volume = {12},
year = {2011},
note = {[Featured in Science](http://www.sciencemag.org/content/331/6014/129.1.full)},
pdf = {Anderson_etal_2011_seacucumbers_with_supplement.pdf}
}
@Article{ boudreau2011,
author = {S A Boudreau and S C Anderson and B Worm},
doi = {10.3354/meps09081},
journal = {Marine Ecology Progress Series},
pages = {169--183},
title = {Top-down interactions and temperature control of snow crab abundance in the northwest Atlantic Ocean},
volume = {429},
year = {2011},
oa = {TRUE},
pdf = {http://www.int-res.com/articles/meps_oa/m429p169.pdf}
}
@Article{ anderson2011b,
author = {Anderson, Sean C and Mills Flemming, Joanna E and Watson, Reg and Lotze, Heike K},
doi = {10.1371/journal.pone.0014735},
journal = {PLOS ONE},
number = {3},
pages = {e14735},
title = {Rapid global expansion of invertebrate fisheries: trends, drivers, and ecosystem Effects},
volume = {6},
year = {2011},
f1000 = {http://f1000.com/prime/9542957?bd=1},
oa = {TRUE},
pdf = {http://www.plosone.org/article/fetchObject.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0014735&representation=PDF},
}
@Article{ anderson2008a,
author = {S C Anderson and H K Lotze and N L Shackell},
doi = {10.1139/F08-156},
journal = {Canadian Journal of Fisheries and Aquatic Sciences},
number = {12},
pages = {2553--2571},
title = {Evaluating the knowledge base for expanding low-trophic-level fisheries in Atlantic Canada},
volume = {65},
year = {2008},
note = {Eighth most-read CJFAS article in 2008},
pdf = {Anderson_etal_2008_knowledge.pdf}
}