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    lucapinello/CRISPResso

    Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

    python docker ngs crispr-analysis crispr amplicon crispr-cas9 cas9

    Updated Jun 23, 2017

    Python
    49

    ctSkennerton/minced

    Mining CRISPRs in Environmental Datasets

    bioinformatics crispr

    Updated Jul 22, 2016

    Java
    25

    ctSkennerton/crass

    The CRISPR assembler

    crispr bioinformatics

    Updated Oct 3, 2016

    C++
    15

    bretonics/CHOMP

    Search guide-RNA sequences given a genome or gene sequence

    crispr grna-sequence bioinformatics crispr-analysis crispr-target grna

    Updated May 5, 2017

    Perl
    4

    epigen/crop-seq

    Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)

    bioinformatics crispr-analysis crispr single-cell

    Updated Jan 17, 2017

    Python
    3

    r3fang/CRESTseq

    CREST-seq peak calling.

    samtools crispr genetics enhancer bioinformatics gene-regulation

    Updated Jun 26, 2017

    C++
    2

    BioGRID/ORCA

    BioGRID Open Resource for CRISPR Analysis (ORCA)

    biogrid crispr-analysis bioinformatics database lims crispr

    Updated Mar 31, 2017

    PHP
    1

    wangqinhu/cas9off

    A large scale off-target analysis tool for CRISPR/Cas9 genome editing system

    prediction crispr high-throughput cas9 off-target genome-editing

    Updated Jul 12, 2017

    Perl
    1

    antonkulaga/CRISPR

    CRISPR evaluation code

    crispr spark bionformatics adam

    Updated Apr 6, 2017

    Scala

    emptyewer/MAPster

    A front-end GUI to map NGS DNA sequencing data using HISAT backend tool. This software offers robust seamless queuein…

    gui hisat2 bioinformatics mapping ngs sequencing rnaseq crispr illumina dnaseq

    Updated Mar 17, 2017

    Python
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Languages

  • 3 Python
  • 2 C++
  • 2 Perl
  • 1 Java
  • 1 PHP
  • 1 Scala

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