This page describes the primary requirements and use cases that GENO is built to support. Additional figures and examples to come soon. 1. Ontological definition of a 'genotype' While this use ...

Welcome to the GENO-ontology wiki!

Instructions: Click the 'Edit' button above and copy markdown version of the text below the break (including canned text about where ingest artifacts are kept). Paste text into your new "Add ...

General Always re-use existing APIs if they exist! No need to write our own in most cases. While remaining mindful of the dependencies we are committing to. Formats CSV/TSV Sometimes a streaming approach ...

The system will be written in python to maximize the ability to use APIs and scripts to multiple bioinformatics resources. At the core of the system will be an abstract class "BaseIngester" (see ...

Welcome to the dipper wiki! Overview This repository will contain code for ingesting data from a variety of external resources (in a variety of syntaxes and formats). It is intended to be executed from ...

Below is an early proposal outlining best practices for how data source ingests or updates are described, tracked, and documented. It is currently being tested and refined by the Dipper Team, and thus ...

Documentation, requirements, and other content describing the development and documentation of the Monarch-app infrastructure. Note that some relevant info might be found on wiki pages for other related ...

Notes on testing: A starter set of tests for data and the ui can be found at: https://github.com/monarch-initiative/monarch-app/tree/master/tests/behave See the *.feature files in that directory for a ...

Phenogrid Github pages with live demo: http://monarch-initiative.github.io/phenogrid/