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Data logistics system enabling real-time genomic epidemiology. Built for the Seattle Flu Study.
Extensions of ID3C for the Seattle Flu Study
Internal platform documentation
the (in development) augur build for understanding influenza dynamics in Seattle
Geocoding addresses into census tracts
Pipelines for assembling NGS data from Seattle flu study.
R interface to database, map model training, and model data API Server
Prototype of incidence heatmap
A proof-of-concept side project for tracking mentions of the flu in tweets in Seattle
Simulated Seattle Flu Study data for developing visualization, analysis, and modeling tools.
A collection of Seattle maps based on different administrative divisions
Seattle Flu Study informatics API, moved to https://github.com/seattleflu/id3c
Seattle Flu Study database, moved to https://github.com/seattleflu/id3c
This repo contains prototypes and visualization sketches for the Web-based Seattle Flu platform