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I have executed phpbu with the next command using the proc_open function (if is disabled I use exec) on php:
cd /var/www/html/website/vendor/plugin/backup/src/resources && php phpbu5.phar --configuration=/var/www/html/website/storage/logs/config.json
There is an option on mysqldump called: --defaults-extra-file so we can pass the credentials into a file instead of the console what do you think? please let me know if you need more info.