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For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
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app Merge branch 'seek-1.10' May 21, 2020
bin added bin folder that should have been added for Rails 4 Mar 27, 2018
config Merge branch 'seek-1.10' Apr 28, 2020
db Merge branch 'seek-1.10' May 14, 2020
docker OPSK-1934 small nginx tweak to fix missing images Jun 28, 2019
docs Update Mar 19, 2020
lib Merge branch 'seek-1.10' May 21, 2020
log put back log dir Mar 21, 2013
public Fixed broken API doc May 28, 2020
sbin merge master to publication Jan 20, 2020
script Bespoke script to make RO Crates for Galaxy covid-19 wfs Mar 25, 2020
solr updated schema for solr to be similar to previously Jun 12, 2017
spec rename AssetsLink as AssetLink May 1, 2020
test Merge branch 'seek-1.10' May 21, 2020
vendor/assets OPSK-1925 Replaced old "lightbox" with new JQuery-compatible version Feb 27, 2019
.codeclimate.yml tell codeclimate to skip javascript May 14, 2018
.dockerignore Docker - back to COPY . . Nov 11, 2016
.generators merge master to publication Jan 20, 2020
.rakeTasks merge master to publication Jan 20, 2020
.rspec add .rspec Jul 10, 2014
.rubocop.yml tell rubocop not to force frozen literals Sep 26, 2018
.ruby-version ruby 2.4.9 Oct 7, 2019
.travis.yml Disable teaspoon Nov 14, 2019
BSD-LICENSE updated license dates Dec 14, 2015
CITATION Added FAIRDOMHub paper to CITATION & bibtex for both Sep 6, 2018 Create Jul 13, 2017
Dockerfile Ensure `zip` package is included in Docker build Mar 24, 2020
Gemfile Bump libxml version to try and fix random test errors/segfaults. #94 May 4, 2020
Gemfile.lock Bump libxml version to try and fix random test errors/segfaults. #94 May 4, 2020
Guardfile fake commit to test docker hub build rule Jan 7, 2020 Update copyright year Jan 7, 2019
Rakefile fix to Docker build - cannot load such file -- gem-licenses Apr 8, 2019 map to the Rails.application.config.relative_url_root when starting up Jun 4, 2018
docker-compose-virtuoso.yml 1.9 for docker-compose Jul 16, 2019
docker-compose-with-email.yml an experimental docker compose that includes a basic postfix emailer Feb 11, 2020
docker-compose.yml Switch docker image back to `master` Mar 26, 2020

Build Status



Copyright © 2009-2019, University of Manchester and HITS gGmbH

BSD 3-clause

About SEEK

The SEEK platform is a web-based resource for sharing heterogeneous scientific research datasets,models or simulations, processes and research outcomes. It preserves associations between them, along with information about the people and organisations involved. Underpinning SEEK is the ISA infrastructure, a standard format for describing how individual experiments are aggregated into wider studies and investigations. Within SEEK, ISA has been extended and is configurable to allow the structure to be used outside of Biology.

SEEK is incorporating semantic technology allowing sophisticated queries over the data, yet without getting in the way of your users.

For an example of SEEK please visit our Demo.

To see SEEK being used for real science, as part of FAIRDOM please visit FAIRDOM SEEK

For more information please visit: SEEK for Science


SEEK is being developed and funded as part of the FAIRDOM initiative. For more information please visit: FAIRDOM.


We recommend installing SEEK on Debian or Ubuntu.

To install the latest release please visit: SEEK install guide

For details about other distributions and installing on Mac OS X please visit: Other distributions guide

The documentation is available on the ghpages branch.

Contacting Us

For details about how to contact us, to raise bugs or offer suggestion, please visit Contacting Us

Contributing to SEEK

In general :

  1. Fork it ( )
  2. Create your feature branch (git checkout -b my-new-feature)
  3. Commit your changes (git commit -am 'Add some feature')
  4. Push to the branch (git push origin my-new-feature)
  5. Create a new Pull Request

For more details on how and what you can contribute to SEEK please visit Contributing

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