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Functional microbiomic approaches using lower airway samples identify a subset of lung microbial communities with evidence of active microbial metabolism

Manuscript Analysis

Analysis Schematic

Prerequisites

  • MacOS/Windows/Linux
  • R (version 3.5.1)

Installing R [typical time = 5-10 minutes]

  1. Open an internet browser and go to www.r-project.org.
  2. Click the "download R" link in the middle of the page under "Getting Started."
  3. Select a CRAN location (a mirror site) and click the corresponding link.
  4. Click on the "Download R for [your operating system]" link at the top of the page.
  5. Click on the file containing the latest version of R under "Files."
  6. Save the .pkg file, double-click it to open, and follow the installation instructions.

Running the Analysis

There are nine seperate analysis pipelines:

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