Skip to content
View semenko's full-sized avatar
Thoroughly Caffeinated
Thoroughly Caffeinated


@GordonLab @ClinDesk @TheMITTech @BradnerLab @mit @Chaudhuri-Lab @mcwdsi
Block or Report

Block or report semenko

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

Hi there! 👋

I'm Nick Semenkovich (semenko), a physician scientist and founding member of the Medical College of Wisconsin's Data Science Institute with a passion for software & infrastructure, information security, and clinical medicine. I spend most of my time developing deep learning models for analysis of cell-free DNA 🧬. You can also find me at


  1. serpent-methylation-pipeline serpent-methylation-pipeline Public

    An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.

    Python 7 2

  2. sts-risk-calculator-cli sts-risk-calculator-cli Public

    A Python command line tool to query the Society of Thoracic Surgeons (STS) Adult Cardiac Risk Calculator API with bulk patient records.

    Python 4

  3. celfie-simplified celfie-simplified Public

    Forked from christacaggiano/celfie

    A quick overhaul of CelFiE — cfDNA cell type of origin estimation

    Jupyter Notebook

  4. chrome-status-monitor-for-google-wifi chrome-status-monitor-for-google-wifi Public

    A Chrome Extension to monitor Google Wifi (or OnHub) status.

    JavaScript 9 3

  5. chrome-limit-history-lifetime chrome-limit-history-lifetime Public

    Persistent history entries are annoying. This Chrome extension limits history entries to a user-adjustable value.

    JavaScript 8

  6. EFForg/https-everywhere EFForg/https-everywhere Public archive

    A browser extension that encrypts your communications with many websites that offer HTTPS but still allow unencrypted connections.

    JavaScript 3.4k 1.1k