[TEST] Add cli test for delete.

seqan · Aug 17, 2023 · fb32036 · fb32036
1 parent b54a646
commit fb32036
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Showing 2 changed files with 18 additions and 0 deletions.
diff --git a/test/cli/CMakeLists.txt b/test/cli/CMakeLists.txt
@@ -12,3 +12,4 @@ target_use_datasources (estimate_options_test FILES IBF_1 mini_gen.fasta)
 add_cli_test (count_options_test.cpp)
 target_use_datasources (count_options_test FILES mini_example.fasta mini_gen.fasta mini_gen.genome)
 add_cli_test (delete_options_test.cpp)
+target_use_datasources (delete_options_test FILES exp_01.fasta)
diff --git a/test/cli/delete_options_test.cpp b/test/cli/delete_options_test.cpp
@@ -20,3 +20,20 @@ TEST_F(delete_options_test, delete_no_options)
     EXPECT_EQ(result.out, expected);
     EXPECT_EQ(result.err, std::string{});
 }
+
+TEST_F(delete_options_test, with_argument)
+{
+    estimate_ibf_arguments ibf_args{};
+    minimiser_arguments minimiser_args{};
+    ibf_args.expression_thresholds = {1, 2};
+    std::vector<double> fpr = {0.05};
+    std::vector<std::filesystem::path> sequence_files = {data("exp_01.fasta"),data("exp_01.fasta")};
+    ibf_args.path_out = "Test_";
+    std::vector<uint8_t> cutoffs{};
+    ibf(sequence_files, ibf_args, minimiser_args, fpr, cutoffs);
+
+    cli_test_result result = execute_app("needle delete -i ", "Test_ ", "0");
+    EXPECT_EQ(result.exit_code, 0);
+    EXPECT_EQ(result.out, "");
+    EXPECT_EQ(result.err, std::string{});
+}