From 1dded79a7bc6ecef0871ece150dea1d939bba136 Mon Sep 17 00:00:00 2001 From: Hannes Hauswedell Date: Mon, 20 Feb 2017 11:56:05 +0100 Subject: [PATCH 1/2] bump seqan version to 2.3.2 --- include/seqan/version.h | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/include/seqan/version.h b/include/seqan/version.h index 7af0b73b62..771642279d 100644 --- a/include/seqan/version.h +++ b/include/seqan/version.h @@ -41,7 +41,7 @@ #define SEQAN_VERSION_MINOR 3 -#define SEQAN_VERSION_PATCH 1 +#define SEQAN_VERSION_PATCH 2 #define SEQAN_VERSION_PRE_RELEASE 0 From 0a0faa5e51527df4a79f2f527fbd3e2f0c19da90 Mon Sep 17 00:00:00 2001 From: Hannes Hauswedell Date: Mon, 20 Feb 2017 11:57:08 +0100 Subject: [PATCH 2/2] bump app version numbers for release 2.3.2 --- apps/alf/CMakeLists.txt | 2 +- apps/bs_tools/CMakeLists.txt | 2 +- apps/dfi/CMakeLists.txt | 2 +- apps/fiona/CMakeLists.txt | 2 +- apps/fx_tools/CMakeLists.txt | 2 +- apps/gustaf/CMakeLists.txt | 2 +- apps/insegt/CMakeLists.txt | 2 +- apps/mason2/CMakeLists.txt | 2 +- apps/micro_razers/CMakeLists.txt | 2 +- apps/ngs_roi/CMakeLists.txt | 2 +- apps/pair_align/CMakeLists.txt | 2 +- apps/param_chooser/CMakeLists.txt | 2 +- apps/rabema/CMakeLists.txt | 2 +- apps/razers/CMakeLists.txt | 2 +- apps/razers3/CMakeLists.txt | 2 +- apps/rep_sep/CMakeLists.txt | 2 +- apps/sak/CMakeLists.txt | 2 +- apps/sam2matrix/CMakeLists.txt | 2 +- apps/samcat/CMakeLists.txt | 2 +- apps/searchjoin/CMakeLists.txt | 2 +- apps/seqan_tcoffee/CMakeLists.txt | 2 +- apps/seqcons2/CMakeLists.txt | 2 +- apps/sgip/CMakeLists.txt | 2 +- apps/snp_store/CMakeLists.txt | 2 +- apps/splazers/CMakeLists.txt | 2 +- apps/stellar/CMakeLists.txt | 2 +- apps/tree_recon/CMakeLists.txt | 2 +- apps/yara/CMakeLists.txt | 2 +- 28 files changed, 28 insertions(+), 28 deletions(-) diff --git a/apps/alf/CMakeLists.txt b/apps/alf/CMakeLists.txt index 7903507e63..e198d89731 100644 --- a/apps/alf/CMakeLists.txt +++ b/apps/alf/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_alf CXX) message (STATUS "Configuring apps/alf") -set (SEQAN_APP_VERSION "1.1.8") +set (SEQAN_APP_VERSION "1.1.9") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/bs_tools/CMakeLists.txt b/apps/bs_tools/CMakeLists.txt index 619d2234fd..8732293b59 100644 --- a/apps/bs_tools/CMakeLists.txt +++ b/apps/bs_tools/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_bs_tools CXX) message (STATUS "Configuring apps/bs_tools") -set (SEQAN_APP_VERSION "0.1.8") +set (SEQAN_APP_VERSION "0.1.9") if ((${CMAKE_SYSTEM_NAME} STREQUAL "FreeBSD") AND ("$ENV{MODEL}" STREQUAL "Nightly")) message (STATUS "bs_tools skipped on FreeBSD because math.h rounding errors.") diff --git a/apps/dfi/CMakeLists.txt b/apps/dfi/CMakeLists.txt index f5352c7718..ee9e7c6a3b 100644 --- a/apps/dfi/CMakeLists.txt +++ b/apps/dfi/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_dfi CXX) message (STATUS "Configuring apps/dfi") -set (SEQAN_APP_VERSION "2.1.8") +set (SEQAN_APP_VERSION "2.1.9") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/fiona/CMakeLists.txt b/apps/fiona/CMakeLists.txt index e00d7b1947..babd267f85 100644 --- a/apps/fiona/CMakeLists.txt +++ b/apps/fiona/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_fiona CXX) message (STATUS "Configuring apps/fiona") -set (SEQAN_APP_VERSION "0.2.8") +set (SEQAN_APP_VERSION "0.2.9") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/fx_tools/CMakeLists.txt b/apps/fx_tools/CMakeLists.txt index fab4cd63cd..b0e9d7ea11 100644 --- a/apps/fx_tools/CMakeLists.txt +++ b/apps/fx_tools/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_fx_tools CXX) message (STATUS "Configuring apps/fx_tools") -set (SEQAN_APP_VERSION "0.2.8") +set (SEQAN_APP_VERSION "0.2.9") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/gustaf/CMakeLists.txt b/apps/gustaf/CMakeLists.txt index 829bd41a97..d8ae68493a 100644 --- a/apps/gustaf/CMakeLists.txt +++ b/apps/gustaf/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_gustaf CXX) message (STATUS "Configuring apps/gustaf") -set (SEQAN_APP_VERSION "1.0.8") +set (SEQAN_APP_VERSION "1.0.9") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/insegt/CMakeLists.txt b/apps/insegt/CMakeLists.txt index c27037eb19..6adda64ff4 100644 --- a/apps/insegt/CMakeLists.txt +++ b/apps/insegt/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_insegt CXX) message (STATUS "Configuring apps/insegt") -set (SEQAN_APP_VERSION "1.1.8") +set (SEQAN_APP_VERSION "1.1.9") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/mason2/CMakeLists.txt b/apps/mason2/CMakeLists.txt index a345347ff3..eaf4345457 100644 --- a/apps/mason2/CMakeLists.txt +++ b/apps/mason2/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_mason2 CXX) message (STATUS "Configuring apps/mason2") -set (SEQAN_APP_VERSION "2.0.7") +set (SEQAN_APP_VERSION "2.0.8") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/micro_razers/CMakeLists.txt b/apps/micro_razers/CMakeLists.txt index e8761c3972..5e2dd4f716 100644 --- a/apps/micro_razers/CMakeLists.txt +++ b/apps/micro_razers/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_micro_razers CXX) message (STATUS "Configuring apps/micro_razers") -set (SEQAN_APP_VERSION "1.0.9") +set (SEQAN_APP_VERSION "1.0.10") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/ngs_roi/CMakeLists.txt b/apps/ngs_roi/CMakeLists.txt index 96f9aaffe7..980224ba01 100644 --- a/apps/ngs_roi/CMakeLists.txt +++ b/apps/ngs_roi/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_ngs_roi CXX) message (STATUS "Configuring apps/ngs_roi") -set (SEQAN_APP_VERSION "0.2.10") +set (SEQAN_APP_VERSION "0.2.11") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/pair_align/CMakeLists.txt b/apps/pair_align/CMakeLists.txt index 6dcb816c4a..70f9e5cabd 100644 --- a/apps/pair_align/CMakeLists.txt +++ b/apps/pair_align/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_pair_align CXX) message (STATUS "Configuring apps/pair_align") -set (SEQAN_APP_VERSION "1.3.6") +set (SEQAN_APP_VERSION "1.3.7") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/param_chooser/CMakeLists.txt b/apps/param_chooser/CMakeLists.txt index 92c16e8663..ef4cfebb14 100644 --- a/apps/param_chooser/CMakeLists.txt +++ b/apps/param_chooser/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_param_chooser CXX) message (STATUS "Configuring apps/param_chooser") -set (SEQAN_APP_VERSION "0.0.7") +set (SEQAN_APP_VERSION "0.0.8") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/rabema/CMakeLists.txt b/apps/rabema/CMakeLists.txt index bc52b516ad..723e22572e 100644 --- a/apps/rabema/CMakeLists.txt +++ b/apps/rabema/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_rabema CXX) message (STATUS "Configuring apps/rabema") -set (SEQAN_APP_VERSION "1.2.8") +set (SEQAN_APP_VERSION "1.2.9") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/razers/CMakeLists.txt b/apps/razers/CMakeLists.txt index 12707cc519..be52d54367 100644 --- a/apps/razers/CMakeLists.txt +++ b/apps/razers/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_razers CXX) message (STATUS "Configuring apps/razers") -set (SEQAN_APP_VERSION "1.5.6") +set (SEQAN_APP_VERSION "1.5.7") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/razers3/CMakeLists.txt b/apps/razers3/CMakeLists.txt index a6370476d1..0eb5157650 100644 --- a/apps/razers3/CMakeLists.txt +++ b/apps/razers3/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_razers3 CXX) message (STATUS "Configuring apps/razers3") -set (SEQAN_APP_VERSION "3.5.6") +set (SEQAN_APP_VERSION "3.5.7") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/rep_sep/CMakeLists.txt b/apps/rep_sep/CMakeLists.txt index 0dd76fcbed..c8b6312cec 100644 --- a/apps/rep_sep/CMakeLists.txt +++ b/apps/rep_sep/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_rep_sep CXX) message (STATUS "Configuring apps/rep_sep") -set (SEQAN_APP_VERSION "0.1.9") +set (SEQAN_APP_VERSION "0.1.10") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/sak/CMakeLists.txt b/apps/sak/CMakeLists.txt index c935026e7b..3687181120 100644 --- a/apps/sak/CMakeLists.txt +++ b/apps/sak/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_sak CXX) message (STATUS "Configuring apps/sak") -set (SEQAN_APP_VERSION "0.4.6") +set (SEQAN_APP_VERSION "0.4.7") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/sam2matrix/CMakeLists.txt b/apps/sam2matrix/CMakeLists.txt index 74d46e0aae..e0d60adbea 100644 --- a/apps/sam2matrix/CMakeLists.txt +++ b/apps/sam2matrix/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_sam2matrix CXX) message (STATUS "Configuring apps/sam2matrix") -set (SEQAN_APP_VERSION "0.3.6") +set (SEQAN_APP_VERSION "0.3.7") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/samcat/CMakeLists.txt b/apps/samcat/CMakeLists.txt index 35b4cfc0ad..963ec6744b 100644 --- a/apps/samcat/CMakeLists.txt +++ b/apps/samcat/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_samcat CXX) message (STATUS "Configuring apps/samcat") -set (SEQAN_APP_VERSION "0.3.6") +set (SEQAN_APP_VERSION "0.3.7") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/searchjoin/CMakeLists.txt b/apps/searchjoin/CMakeLists.txt index bcee315256..576df51e1d 100644 --- a/apps/searchjoin/CMakeLists.txt +++ b/apps/searchjoin/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_searchjoin CXX) message (STATUS "Configuring apps/searchjoin") -set (SEQAN_APP_VERSION "0.5.6") +set (SEQAN_APP_VERSION "0.5.7") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/seqan_tcoffee/CMakeLists.txt b/apps/seqan_tcoffee/CMakeLists.txt index 850a780512..66e85e265c 100644 --- a/apps/seqan_tcoffee/CMakeLists.txt +++ b/apps/seqan_tcoffee/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_seqan_tcoffee CXX) message (STATUS "Configuring apps/seqan_tcoffee") -set (SEQAN_APP_VERSION "1.13.6") +set (SEQAN_APP_VERSION "1.13.7") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/seqcons2/CMakeLists.txt b/apps/seqcons2/CMakeLists.txt index ac507ec8d5..8b5fcc2dc7 100644 --- a/apps/seqcons2/CMakeLists.txt +++ b/apps/seqcons2/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_seqcons2 CXX) message (STATUS "Configuring apps/seqcons2") -set (SEQAN_APP_VERSION "2.0.7") +set (SEQAN_APP_VERSION "2.0.8") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/sgip/CMakeLists.txt b/apps/sgip/CMakeLists.txt index 717b94f38e..71a28ac665 100755 --- a/apps/sgip/CMakeLists.txt +++ b/apps/sgip/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_sgip CXX) message (STATUS "Configuring apps/sgip") -set (SEQAN_APP_VERSION "1.4.6") +set (SEQAN_APP_VERSION "1.4.7") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/snp_store/CMakeLists.txt b/apps/snp_store/CMakeLists.txt index 8739a17f16..e846ec3d3e 100644 --- a/apps/snp_store/CMakeLists.txt +++ b/apps/snp_store/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_snp_store CXX) message (STATUS "Configuring apps/snp_store") -set (SEQAN_APP_VERSION "1.3.6") +set (SEQAN_APP_VERSION "1.3.7") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/splazers/CMakeLists.txt b/apps/splazers/CMakeLists.txt index 364b1bf368..bb85d5dfa3 100644 --- a/apps/splazers/CMakeLists.txt +++ b/apps/splazers/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_splazers CXX) message (STATUS "Configuring apps/splazers") -set (SEQAN_APP_VERSION "1.3.6") +set (SEQAN_APP_VERSION "1.3.7") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/stellar/CMakeLists.txt b/apps/stellar/CMakeLists.txt index bc101112cd..a94d1bf3da 100644 --- a/apps/stellar/CMakeLists.txt +++ b/apps/stellar/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_stellar CXX) message (STATUS "Configuring apps/stellar") -set (SEQAN_APP_VERSION "1.4.9") +set (SEQAN_APP_VERSION "1.4.10") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/tree_recon/CMakeLists.txt b/apps/tree_recon/CMakeLists.txt index 154a483814..d39248f490 100644 --- a/apps/tree_recon/CMakeLists.txt +++ b/apps/tree_recon/CMakeLists.txt @@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0) project (seqan_apps_tree_recon CXX) message (STATUS "Configuring apps/tree_recon") -set (SEQAN_APP_VERSION "1.4.6") +set (SEQAN_APP_VERSION "1.4.7") # ---------------------------------------------------------------------------- # Dependencies diff --git a/apps/yara/CMakeLists.txt b/apps/yara/CMakeLists.txt index f59a30c9ac..73ec26af84 100644 --- a/apps/yara/CMakeLists.txt +++ b/apps/yara/CMakeLists.txt @@ -46,7 +46,7 @@ endif (NOT BZIP2_FOUND) # App-Level Configuration # ---------------------------------------------------------------------------- -set (SEQAN_APP_VERSION "0.9.9") +set (SEQAN_APP_VERSION "0.9.10") option (YARA_LARGE_CONTIGS "Set to OFF to disable support for more than 32k contigs or contigs longer than 4Gbp." ON) if (YARA_LARGE_CONTIGS AND NOT SEQAN_TRAVIS_BUILD)