From 1dded79a7bc6ecef0871ece150dea1d939bba136 Mon Sep 17 00:00:00 2001
From: Hannes Hauswedell
Date: Mon, 20 Feb 2017 11:56:05 +0100
Subject: [PATCH 1/2] bump seqan version to 2.3.2
---
include/seqan/version.h | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/include/seqan/version.h b/include/seqan/version.h
index 7af0b73b62..771642279d 100644
--- a/include/seqan/version.h
+++ b/include/seqan/version.h
@@ -41,7 +41,7 @@
#define SEQAN_VERSION_MINOR 3
-#define SEQAN_VERSION_PATCH 1
+#define SEQAN_VERSION_PATCH 2
#define SEQAN_VERSION_PRE_RELEASE 0
From 0a0faa5e51527df4a79f2f527fbd3e2f0c19da90 Mon Sep 17 00:00:00 2001
From: Hannes Hauswedell
Date: Mon, 20 Feb 2017 11:57:08 +0100
Subject: [PATCH 2/2] bump app version numbers for release 2.3.2
---
apps/alf/CMakeLists.txt | 2 +-
apps/bs_tools/CMakeLists.txt | 2 +-
apps/dfi/CMakeLists.txt | 2 +-
apps/fiona/CMakeLists.txt | 2 +-
apps/fx_tools/CMakeLists.txt | 2 +-
apps/gustaf/CMakeLists.txt | 2 +-
apps/insegt/CMakeLists.txt | 2 +-
apps/mason2/CMakeLists.txt | 2 +-
apps/micro_razers/CMakeLists.txt | 2 +-
apps/ngs_roi/CMakeLists.txt | 2 +-
apps/pair_align/CMakeLists.txt | 2 +-
apps/param_chooser/CMakeLists.txt | 2 +-
apps/rabema/CMakeLists.txt | 2 +-
apps/razers/CMakeLists.txt | 2 +-
apps/razers3/CMakeLists.txt | 2 +-
apps/rep_sep/CMakeLists.txt | 2 +-
apps/sak/CMakeLists.txt | 2 +-
apps/sam2matrix/CMakeLists.txt | 2 +-
apps/samcat/CMakeLists.txt | 2 +-
apps/searchjoin/CMakeLists.txt | 2 +-
apps/seqan_tcoffee/CMakeLists.txt | 2 +-
apps/seqcons2/CMakeLists.txt | 2 +-
apps/sgip/CMakeLists.txt | 2 +-
apps/snp_store/CMakeLists.txt | 2 +-
apps/splazers/CMakeLists.txt | 2 +-
apps/stellar/CMakeLists.txt | 2 +-
apps/tree_recon/CMakeLists.txt | 2 +-
apps/yara/CMakeLists.txt | 2 +-
28 files changed, 28 insertions(+), 28 deletions(-)
diff --git a/apps/alf/CMakeLists.txt b/apps/alf/CMakeLists.txt
index 7903507e63..e198d89731 100644
--- a/apps/alf/CMakeLists.txt
+++ b/apps/alf/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_alf CXX)
message (STATUS "Configuring apps/alf")
-set (SEQAN_APP_VERSION "1.1.8")
+set (SEQAN_APP_VERSION "1.1.9")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/bs_tools/CMakeLists.txt b/apps/bs_tools/CMakeLists.txt
index 619d2234fd..8732293b59 100644
--- a/apps/bs_tools/CMakeLists.txt
+++ b/apps/bs_tools/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_bs_tools CXX)
message (STATUS "Configuring apps/bs_tools")
-set (SEQAN_APP_VERSION "0.1.8")
+set (SEQAN_APP_VERSION "0.1.9")
if ((${CMAKE_SYSTEM_NAME} STREQUAL "FreeBSD") AND ("$ENV{MODEL}" STREQUAL "Nightly"))
message (STATUS "bs_tools skipped on FreeBSD because math.h rounding errors.")
diff --git a/apps/dfi/CMakeLists.txt b/apps/dfi/CMakeLists.txt
index f5352c7718..ee9e7c6a3b 100644
--- a/apps/dfi/CMakeLists.txt
+++ b/apps/dfi/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_dfi CXX)
message (STATUS "Configuring apps/dfi")
-set (SEQAN_APP_VERSION "2.1.8")
+set (SEQAN_APP_VERSION "2.1.9")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/fiona/CMakeLists.txt b/apps/fiona/CMakeLists.txt
index e00d7b1947..babd267f85 100644
--- a/apps/fiona/CMakeLists.txt
+++ b/apps/fiona/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_fiona CXX)
message (STATUS "Configuring apps/fiona")
-set (SEQAN_APP_VERSION "0.2.8")
+set (SEQAN_APP_VERSION "0.2.9")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/fx_tools/CMakeLists.txt b/apps/fx_tools/CMakeLists.txt
index fab4cd63cd..b0e9d7ea11 100644
--- a/apps/fx_tools/CMakeLists.txt
+++ b/apps/fx_tools/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_fx_tools CXX)
message (STATUS "Configuring apps/fx_tools")
-set (SEQAN_APP_VERSION "0.2.8")
+set (SEQAN_APP_VERSION "0.2.9")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/gustaf/CMakeLists.txt b/apps/gustaf/CMakeLists.txt
index 829bd41a97..d8ae68493a 100644
--- a/apps/gustaf/CMakeLists.txt
+++ b/apps/gustaf/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_gustaf CXX)
message (STATUS "Configuring apps/gustaf")
-set (SEQAN_APP_VERSION "1.0.8")
+set (SEQAN_APP_VERSION "1.0.9")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/insegt/CMakeLists.txt b/apps/insegt/CMakeLists.txt
index c27037eb19..6adda64ff4 100644
--- a/apps/insegt/CMakeLists.txt
+++ b/apps/insegt/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_insegt CXX)
message (STATUS "Configuring apps/insegt")
-set (SEQAN_APP_VERSION "1.1.8")
+set (SEQAN_APP_VERSION "1.1.9")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/mason2/CMakeLists.txt b/apps/mason2/CMakeLists.txt
index a345347ff3..eaf4345457 100644
--- a/apps/mason2/CMakeLists.txt
+++ b/apps/mason2/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_mason2 CXX)
message (STATUS "Configuring apps/mason2")
-set (SEQAN_APP_VERSION "2.0.7")
+set (SEQAN_APP_VERSION "2.0.8")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/micro_razers/CMakeLists.txt b/apps/micro_razers/CMakeLists.txt
index e8761c3972..5e2dd4f716 100644
--- a/apps/micro_razers/CMakeLists.txt
+++ b/apps/micro_razers/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_micro_razers CXX)
message (STATUS "Configuring apps/micro_razers")
-set (SEQAN_APP_VERSION "1.0.9")
+set (SEQAN_APP_VERSION "1.0.10")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/ngs_roi/CMakeLists.txt b/apps/ngs_roi/CMakeLists.txt
index 96f9aaffe7..980224ba01 100644
--- a/apps/ngs_roi/CMakeLists.txt
+++ b/apps/ngs_roi/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_ngs_roi CXX)
message (STATUS "Configuring apps/ngs_roi")
-set (SEQAN_APP_VERSION "0.2.10")
+set (SEQAN_APP_VERSION "0.2.11")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/pair_align/CMakeLists.txt b/apps/pair_align/CMakeLists.txt
index 6dcb816c4a..70f9e5cabd 100644
--- a/apps/pair_align/CMakeLists.txt
+++ b/apps/pair_align/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_pair_align CXX)
message (STATUS "Configuring apps/pair_align")
-set (SEQAN_APP_VERSION "1.3.6")
+set (SEQAN_APP_VERSION "1.3.7")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/param_chooser/CMakeLists.txt b/apps/param_chooser/CMakeLists.txt
index 92c16e8663..ef4cfebb14 100644
--- a/apps/param_chooser/CMakeLists.txt
+++ b/apps/param_chooser/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_param_chooser CXX)
message (STATUS "Configuring apps/param_chooser")
-set (SEQAN_APP_VERSION "0.0.7")
+set (SEQAN_APP_VERSION "0.0.8")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/rabema/CMakeLists.txt b/apps/rabema/CMakeLists.txt
index bc52b516ad..723e22572e 100644
--- a/apps/rabema/CMakeLists.txt
+++ b/apps/rabema/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_rabema CXX)
message (STATUS "Configuring apps/rabema")
-set (SEQAN_APP_VERSION "1.2.8")
+set (SEQAN_APP_VERSION "1.2.9")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/razers/CMakeLists.txt b/apps/razers/CMakeLists.txt
index 12707cc519..be52d54367 100644
--- a/apps/razers/CMakeLists.txt
+++ b/apps/razers/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_razers CXX)
message (STATUS "Configuring apps/razers")
-set (SEQAN_APP_VERSION "1.5.6")
+set (SEQAN_APP_VERSION "1.5.7")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/razers3/CMakeLists.txt b/apps/razers3/CMakeLists.txt
index a6370476d1..0eb5157650 100644
--- a/apps/razers3/CMakeLists.txt
+++ b/apps/razers3/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_razers3 CXX)
message (STATUS "Configuring apps/razers3")
-set (SEQAN_APP_VERSION "3.5.6")
+set (SEQAN_APP_VERSION "3.5.7")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/rep_sep/CMakeLists.txt b/apps/rep_sep/CMakeLists.txt
index 0dd76fcbed..c8b6312cec 100644
--- a/apps/rep_sep/CMakeLists.txt
+++ b/apps/rep_sep/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_rep_sep CXX)
message (STATUS "Configuring apps/rep_sep")
-set (SEQAN_APP_VERSION "0.1.9")
+set (SEQAN_APP_VERSION "0.1.10")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/sak/CMakeLists.txt b/apps/sak/CMakeLists.txt
index c935026e7b..3687181120 100644
--- a/apps/sak/CMakeLists.txt
+++ b/apps/sak/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_sak CXX)
message (STATUS "Configuring apps/sak")
-set (SEQAN_APP_VERSION "0.4.6")
+set (SEQAN_APP_VERSION "0.4.7")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/sam2matrix/CMakeLists.txt b/apps/sam2matrix/CMakeLists.txt
index 74d46e0aae..e0d60adbea 100644
--- a/apps/sam2matrix/CMakeLists.txt
+++ b/apps/sam2matrix/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_sam2matrix CXX)
message (STATUS "Configuring apps/sam2matrix")
-set (SEQAN_APP_VERSION "0.3.6")
+set (SEQAN_APP_VERSION "0.3.7")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/samcat/CMakeLists.txt b/apps/samcat/CMakeLists.txt
index 35b4cfc0ad..963ec6744b 100644
--- a/apps/samcat/CMakeLists.txt
+++ b/apps/samcat/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_samcat CXX)
message (STATUS "Configuring apps/samcat")
-set (SEQAN_APP_VERSION "0.3.6")
+set (SEQAN_APP_VERSION "0.3.7")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/searchjoin/CMakeLists.txt b/apps/searchjoin/CMakeLists.txt
index bcee315256..576df51e1d 100644
--- a/apps/searchjoin/CMakeLists.txt
+++ b/apps/searchjoin/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_searchjoin CXX)
message (STATUS "Configuring apps/searchjoin")
-set (SEQAN_APP_VERSION "0.5.6")
+set (SEQAN_APP_VERSION "0.5.7")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/seqan_tcoffee/CMakeLists.txt b/apps/seqan_tcoffee/CMakeLists.txt
index 850a780512..66e85e265c 100644
--- a/apps/seqan_tcoffee/CMakeLists.txt
+++ b/apps/seqan_tcoffee/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_seqan_tcoffee CXX)
message (STATUS "Configuring apps/seqan_tcoffee")
-set (SEQAN_APP_VERSION "1.13.6")
+set (SEQAN_APP_VERSION "1.13.7")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/seqcons2/CMakeLists.txt b/apps/seqcons2/CMakeLists.txt
index ac507ec8d5..8b5fcc2dc7 100644
--- a/apps/seqcons2/CMakeLists.txt
+++ b/apps/seqcons2/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_seqcons2 CXX)
message (STATUS "Configuring apps/seqcons2")
-set (SEQAN_APP_VERSION "2.0.7")
+set (SEQAN_APP_VERSION "2.0.8")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/sgip/CMakeLists.txt b/apps/sgip/CMakeLists.txt
index 717b94f38e..71a28ac665 100755
--- a/apps/sgip/CMakeLists.txt
+++ b/apps/sgip/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_sgip CXX)
message (STATUS "Configuring apps/sgip")
-set (SEQAN_APP_VERSION "1.4.6")
+set (SEQAN_APP_VERSION "1.4.7")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/snp_store/CMakeLists.txt b/apps/snp_store/CMakeLists.txt
index 8739a17f16..e846ec3d3e 100644
--- a/apps/snp_store/CMakeLists.txt
+++ b/apps/snp_store/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_snp_store CXX)
message (STATUS "Configuring apps/snp_store")
-set (SEQAN_APP_VERSION "1.3.6")
+set (SEQAN_APP_VERSION "1.3.7")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/splazers/CMakeLists.txt b/apps/splazers/CMakeLists.txt
index 364b1bf368..bb85d5dfa3 100644
--- a/apps/splazers/CMakeLists.txt
+++ b/apps/splazers/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_splazers CXX)
message (STATUS "Configuring apps/splazers")
-set (SEQAN_APP_VERSION "1.3.6")
+set (SEQAN_APP_VERSION "1.3.7")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/stellar/CMakeLists.txt b/apps/stellar/CMakeLists.txt
index bc101112cd..a94d1bf3da 100644
--- a/apps/stellar/CMakeLists.txt
+++ b/apps/stellar/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_stellar CXX)
message (STATUS "Configuring apps/stellar")
-set (SEQAN_APP_VERSION "1.4.9")
+set (SEQAN_APP_VERSION "1.4.10")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/tree_recon/CMakeLists.txt b/apps/tree_recon/CMakeLists.txt
index 154a483814..d39248f490 100644
--- a/apps/tree_recon/CMakeLists.txt
+++ b/apps/tree_recon/CMakeLists.txt
@@ -10,7 +10,7 @@ cmake_minimum_required (VERSION 3.0.0)
project (seqan_apps_tree_recon CXX)
message (STATUS "Configuring apps/tree_recon")
-set (SEQAN_APP_VERSION "1.4.6")
+set (SEQAN_APP_VERSION "1.4.7")
# ----------------------------------------------------------------------------
# Dependencies
diff --git a/apps/yara/CMakeLists.txt b/apps/yara/CMakeLists.txt
index f59a30c9ac..73ec26af84 100644
--- a/apps/yara/CMakeLists.txt
+++ b/apps/yara/CMakeLists.txt
@@ -46,7 +46,7 @@ endif (NOT BZIP2_FOUND)
# App-Level Configuration
# ----------------------------------------------------------------------------
-set (SEQAN_APP_VERSION "0.9.9")
+set (SEQAN_APP_VERSION "0.9.10")
option (YARA_LARGE_CONTIGS "Set to OFF to disable support for more than 32k contigs or contigs longer than 4Gbp." ON)
if (YARA_LARGE_CONTIGS AND NOT SEQAN_TRAVIS_BUILD)