From ed97ab41725f52ec561ec45f7b017f348a9a4937 Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Sat, 4 Apr 2026 21:00:32 +0000 Subject: [PATCH] fix: use bash instead of sh to run mapper.sh in test_full Agent-Logs-Url: https://github.com/sequana/mapper/sessions/d656de8f-27ae-457c-98b5-e224d32285f6 Co-authored-by: cokelaer <778821+cokelaer@users.noreply.github.com> --- test/test_main.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/test/test_main.py b/test/test_main.py index 65b9a89..e8a2e06 100644 --- a/test/test_main.py +++ b/test/test_main.py @@ -91,7 +91,7 @@ def test_full(): cmd = cmd.format(sharedir, wk) subprocess.call(cmd.split()) - stat = subprocess.call("sh mapper.sh".split(), cwd=wk) + stat = subprocess.call("bash mapper.sh".split(), cwd=wk) assert os.path.exists(wk + "/multiqc/multiqc_report.html")