diff --git a/poetry.lock b/poetry.lock index c884c1a..caa7633 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. [[package]] name = "adjusttext" version = "0.8" description = "Iteratively adjust text position in matplotlib plots to minimize overlaps" -category = "main" optional = false python-versions = "*" files = [ @@ -20,7 +19,6 @@ numpy = "*" name = "aiohttp" version = "3.9.1" description = "Async http client/server framework (asyncio)" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -117,7 +115,6 @@ speedups = ["Brotli", "aiodns", "brotlicffi"] name = "aiosignal" version = "1.3.1" description = "aiosignal: a list of registered asynchronous callbacks" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -132,7 +129,6 @@ frozenlist = ">=1.1.0" name = "appdirs" version = "1.4.4" description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "main" optional = false python-versions = "*" files = [ @@ -144,7 +140,6 @@ files = [ name = "arrow" version = "1.3.0" description = "Better dates & times for Python" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -158,13 +153,12 @@ types-python-dateutil = ">=2.8.10" [package.extras] doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"] -test = ["dateparser (>=1.0.0,<2.0.0)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (>=3.0.0,<4.0.0)"] +test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"] [[package]] name = "async-timeout" version = "4.0.3" description = "Timeout context manager for asyncio programs" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -176,7 +170,6 @@ files = [ name = "attrs" version = "23.1.0" description = "Classes Without Boilerplate" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -195,7 +188,6 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte name = "beautifulsoup4" version = "4.12.2" description = "Screen-scraping library" -category = "main" optional = false python-versions = ">=3.6.0" files = [ @@ -214,7 +206,6 @@ lxml = ["lxml"] name = "binaryornot" version = "0.4.4" description = "Ultra-lightweight pure Python package to check if a file is binary or text." -category = "main" optional = false python-versions = "*" files = [ @@ -229,7 +220,6 @@ chardet = ">=3.0.2" name = "bioservices" version = "1.11.2" description = "Access to Biological Web Services from Python" -category = "main" optional = false python-versions = "*" files = [ @@ -259,7 +249,6 @@ testing = ["coveralls", "pytest", "pytest-cov", "pytest-mock", "pytest-runner", name = "black" version = "23.12.0" description = "The uncompromising code formatter." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -306,7 +295,6 @@ uvloop = ["uvloop (>=0.15.2)"] name = "brokenaxes" version = "0.5.0" description = "Create broken axes" -category = "main" optional = false python-versions = "*" files = [ @@ -323,7 +311,6 @@ test = ["pytest"] name = "bx-python" version = "0.10.0" description = "Tools for manipulating biological data, particularly multiple sequence alignments" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -369,7 +356,6 @@ numpy = "*" name = "cattrs" version = "23.2.3" description = "Composable complex class support for attrs and dataclasses." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -395,7 +381,6 @@ ujson = ["ujson (>=5.7.0)"] name = "certifi" version = "2023.11.17" description = "Python package for providing Mozilla's CA Bundle." -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -407,7 +392,6 @@ files = [ name = "cffi" version = "1.16.0" description = "Foreign Function Interface for Python calling C code." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -472,7 +456,6 @@ pycparser = "*" name = "chardet" version = "5.2.0" description = "Universal encoding detector for Python 3" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -484,7 +467,6 @@ files = [ name = "charset-normalizer" version = "2.1.1" description = "The Real First Universal Charset Detector. 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name = "docutils" version = "0.20.1" description = "Docutils -- Python Documentation Utilities" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1017,7 +984,6 @@ files = [ name = "dpath" version = "2.1.6" description = "Filesystem-like pathing and searching for dictionaries" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1029,7 +995,6 @@ files = [ name = "easydev" version = "0.12.1" description = "Common utilities to ease the development of Python packages" -category = "main" optional = false python-versions = "*" files = [ @@ -1048,7 +1013,6 @@ profiler = ["line_profiler_test"] name = "exceptiongroup" version = "1.2.0" description = "Backport of PEP 654 (exception groups)" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1063,7 +1027,6 @@ test = ["pytest (>=6)"] name = "fastjsonschema" version = "2.19.0" description = "Fastest Python implementation of JSON schema" -category = "main" optional = false python-versions = "*" files = [ @@ -1078,7 +1041,6 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc name = "fonttools" version = "4.47.0" description = "Tools to manipulate font files" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1144,7 +1106,6 @@ woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"] name = "frozenlist" version = "1.4.1" description = "A list-like structure which implements collections.abc.MutableSequence" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1231,7 +1192,6 @@ files = [ name = "future" version = "0.18.3" description = "Clean single-source support for Python 3 and 2" -category = "main" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" files = [ @@ -1242,7 +1202,6 @@ files = [ name = "gevent" version = "23.9.1" description = "Coroutine-based network library" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1308,7 +1267,6 @@ test = ["cffi (>=1.12.2)", "coverage (>=5.0)", "dnspython (>=1.16.0,<2.0)", "idn name = "gitdb" version = "4.0.11" description = "Git Object Database" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1323,7 +1281,6 @@ smmap = ">=3.0.1,<6" name = "gitpython" version = "3.1.40" description = "GitPython is a Python library used to interact with Git repositories" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1341,7 +1298,6 @@ test = ["black", "coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mock", "mypy", "pre name = "greenlet" version = "3.0.2" description = "Lightweight in-process concurrent programming" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1413,7 +1369,6 @@ test = ["objgraph", "psutil"] name = "grequests" version = "0.7.0" description = "Requests + Gevent" -category = "main" optional = false python-versions = "*" files = [ @@ -1429,7 +1384,6 @@ requests = "*" name = "gseapy" version = "1.1.0" description = "Gene Set Enrichment Analysis in Python" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1480,7 +1434,6 @@ scipy = "*" name = "h11" version = "0.14.0" description = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1492,7 +1445,6 @@ files = [ name = "humanfriendly" version = "10.0" description = "Human friendly output for text interfaces using Python" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -1507,7 +1459,6 @@ pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_ve name = "idna" version = "3.6" description = "Internationalized Domain Names in Applications (IDNA)" -category = "main" optional = false python-versions = ">=3.5" files = [ @@ -1519,7 +1470,6 @@ files = [ name = "importlib-metadata" version = "7.0.0" description = "Read 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"Lightweight SOAP client (community fork)" -category = "main" optional = false python-versions = ">=3.5" files = [ @@ -3729,7 +3636,6 @@ files = [ name = "tabulate" version = "0.9.0" description = "Pretty-print tabular data" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -3744,7 +3650,6 @@ widechars = ["wcwidth"] name = "tenacity" version = "8.2.3" description = "Retry code until it succeeds" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -3759,7 +3664,6 @@ doc = ["reno", "sphinx", "tornado (>=4.5)"] name = "text-unidecode" version = "1.3" description = "The most basic Text::Unidecode port" -category = "main" optional = false python-versions = "*" files = [ @@ -3771,7 +3675,6 @@ files = [ name = "threadpoolctl" version = "3.2.0" description = "threadpoolctl" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -3783,7 +3686,6 @@ files = [ name = "throttler" version = "1.2.2" description = "Zero-dependency Python package for easy throttling with asyncio support" -category = "main" optional = false python-versions = "*" files = [ @@ -3798,7 +3700,6 @@ dev = ["aiohttp (>=3.8)", "codecov (>=2.1)", "flake8 (>=4.0)", "pytest (>=7.0)", name = "tomli" version = "2.0.1" description = "A lil' TOML parser" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -3810,7 +3711,6 @@ files = [ name = "toposort" version = "1.10" description = "Implements a topological sort algorithm." -category = "main" optional = false python-versions = "*" files = [ @@ -3822,7 +3722,6 @@ files = [ name = "tqdm" version = "4.66.1" description = "Fast, Extensible Progress Meter" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -3843,7 +3742,6 @@ telegram = ["requests"] name = "traitlets" version = "5.14.0" description = "Traitlets Python configuration system" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -3859,7 +3757,6 @@ test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0, name = "trio" version = "0.23.2" description = "A friendly Python library for async concurrency and I/O" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -3880,7 +3777,6 @@ sortedcontainers = "*" name = "trio-websocket" version = "0.11.1" description = "WebSocket library for Trio" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -3897,7 +3793,6 @@ wsproto = ">=0.14" name = "types-python-dateutil" version = "2.8.19.14" description = "Typing stubs for python-dateutil" -category = "main" optional = false python-versions = "*" files = [ @@ -3909,7 +3804,6 @@ files = [ name = "typing-extensions" version = "4.9.0" description = "Backported and Experimental Type Hints for Python 3.8+" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -3921,7 +3815,6 @@ files = [ name = "tzdata" version = "2023.3" description = "Provider of IANA time zone data" -category = "main" optional = false python-versions = ">=2" files = [ @@ -3933,7 +3826,6 @@ files = [ name = "upsetplot" version = "0.8.0" description = "Draw Lex et al.'s UpSet plots with Pandas and Matplotlib" -category = "main" optional = false python-versions = "*" files = [ @@ -3948,7 +3840,6 @@ pandas = ">=0.23" name = "url-normalize" version = "1.4.3" description = "URL normalization for Python" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" files = [ @@ -3963,7 +3854,6 @@ six = "*" name = "urllib3" version = "2.1.0" description = "HTTP library with thread-safe connection pooling, file post, and more." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -3983,7 +3873,6 @@ zstd = ["zstandard (>=0.18.0)"] name = "vcfpy" version = "0.13.6" description = "Python 3 VCF library with good support for both reading and writing" -category = "main" optional = false python-versions = "*" files = [ @@ -3997,7 +3886,6 @@ pysam = ">=0.10.0" name = "versionix" version = "0.2.3" description = "Get version of any tools" -category = "main" optional = false python-versions = ">=3.8,<4.0" files = [ @@ -4013,7 +3901,6 @@ rich-click = ">=1.7.1,<2.0.0" name = "wrapt" version = "1.16.0" description = "Module for decorators, wrappers and monkey patching." -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -4093,7 +3980,6 @@ files = [ name = "wsproto" version = "1.2.0" description = "WebSockets state-machine based protocol implementation" -category = "main" optional = false python-versions = ">=3.7.0" files = [ @@ -4108,7 +3994,6 @@ h11 = ">=0.9.0,<1" name = "xlrd" version = "2.0.1" description = "Library for developers to extract data from Microsoft Excel (tm) .xls spreadsheet files" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" files = [ @@ -4125,7 +4010,6 @@ test = ["pytest", "pytest-cov"] name = "xmltodict" version = "0.13.0" description = "Makes working with XML feel like you are working with JSON" -category = "main" optional = false python-versions = ">=3.4" files = [ @@ -4137,7 +4021,6 @@ files = [ name = "yarl" version = "1.9.4" description = "Yet another URL library" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -4241,7 +4124,6 @@ multidict = ">=4.0" name = "yte" version = "1.5.4" description = "A YAML template engine with Python expressions" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -4258,7 +4140,6 @@ pyyaml = ">=6.0,<7.0" name = "zipp" version = "3.17.0" description = "Backport of pathlib-compatible object wrapper for zip files" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -4274,7 +4155,6 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p name = "zope-event" version = "5.0" description = "Very basic event publishing system" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -4293,7 +4173,6 @@ test = ["zope.testrunner"] name = "zope-interface" version = "6.1" description = "Interfaces for Python" -category = "main" optional = false python-versions = ">=3.7" files = [