From f8d2e7d75f754399e9616cdd54c33385ef0c5c66 Mon Sep 17 00:00:00 2001 From: Thomas Cokelaer Date: Sat, 4 Apr 2026 22:16:06 +0200 Subject: [PATCH 1/2] Fix pyproject --- pyproject.toml | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 8136623..477aa1a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -31,7 +31,6 @@ dependencies = [ "sequana-pipetools >=1.5.0", "sequana >=0.17", "sequana-wrappers", - "snakemake >=7.3", "click-completion >=0.5.2", "click >=8.1.7", "rich-click >=1.7.2" @@ -42,9 +41,6 @@ packages = [ {include = "sequana_pipelines"} ] - - - [project.scripts] sequana_trf = "sequana_pipelines.trf.main:main" @@ -52,6 +48,7 @@ sequana_trf = "sequana_pipelines.trf.main:main" [tool.poetry.group.dev.dependencies] black = "^23.7.0" pytest = "^7.4.0" +balkc = "^23.3.0" mock = "^5.1.0" pytest-mock = "^3.11.1" pytest-cov = "^4.1.0" From 0321022dd647a57662e59c8e4f6fa0ed972c5ab5 Mon Sep 17 00:00:00 2001 From: Thomas Cokelaer Date: Sat, 4 Apr 2026 23:13:35 +0200 Subject: [PATCH 2/2] fix typo --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index 904772b..bf20e7e 100644 --- a/environment.yml +++ b/environment.yml @@ -8,7 +8,7 @@ channels: dependencies: - trf - samtools - - pulp>=2.0 + - pulp>=2.7 - pip: - sequana - bioconvert