diff --git a/.github/workflows/apptainer.yml b/.github/workflows/apptainer.yml
index bd7801d..3f607be 100644
--- a/.github/workflows/apptainer.yml
+++ b/.github/workflows/apptainer.yml
@@ -53,6 +53,6 @@ jobs:
 
     - name: testing
       run: |
-        sequana_trf --input-directory test/data/ --nreads 100 --force --use-apptainer --apptainer-prefix ~/images/ && cd trf && sh trf.sh
+        sequana_trf --input-directory test/data/ --nreads 100 --force --use-apptainer --apptainer-prefix ~/images/ && cd trf && bash trf.sh
 
 
diff --git a/poetry.lock b/poetry.lock
deleted file mode 100644
index 6b1aaec..0000000
--- a/poetry.lock
+++ /dev/null
@@ -1,4342 +0,0 @@
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-
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-python-versions = ">=3.7"
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-dpath = ">=2.1,<3.0"
-plac = ">=1.3.4,<2.0.0"
-pyyaml = ">=6.0,<7.0"
-
-[[package]]
-name = "zipp"
-version = "3.17.0"
-description = "Backport of pathlib-compatible object wrapper for zip files"
-category = "main"
-optional = false
-python-versions = ">=3.8"
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-[package.extras]
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-testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
-
-[[package]]
-name = "zope-event"
-version = "5.0"
-description = "Very basic event publishing system"
-category = "main"
-optional = false
-python-versions = ">=3.7"
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-
-[package.dependencies]
-setuptools = "*"
-
-[package.extras]
-docs = ["Sphinx"]
-test = ["zope.testrunner"]
-
-[[package]]
-name = "zope-interface"
-version = "6.1"
-description = "Interfaces for Python"
-category = "main"
-optional = false
-python-versions = ">=3.7"
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-    {file = "zope.interface-6.1.tar.gz", hash = "sha256:2fdc7ccbd6eb6b7df5353012fbed6c3c5d04ceaca0038f75e601060e95345309"},
-]
-
-[package.dependencies]
-setuptools = "*"
-
-[package.extras]
-docs = ["Sphinx", "repoze.sphinx.autointerface", "sphinx-rtd-theme"]
-test = ["coverage (>=5.0.3)", "zope.event", "zope.testing"]
-testing = ["coverage (>=5.0.3)", "zope.event", "zope.testing"]
-
-[metadata]
-lock-version = "2.0"
-python-versions = ">=3.8,<4.0"
-content-hash = "81ed259dbe31448e26a1c7890285c8f25e82114be876e2f46b3ec22ef479eb37"
diff --git a/pyproject.toml b/pyproject.toml
index 421b4c7..a12e5a7 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -30,6 +30,7 @@ requires-python = ">=3.9,<4.0"
 dependencies = [
     "sequana-pipetools >=1.5.0",
     "sequana >=0.17",
+    "sequana-wrappers",
     "click-completion >=0.5.2",
     "click >=8.1.7",
     "rich-click >=1.7.2"
diff --git a/test/test_main.py b/test/test_main.py
index 4c58da1..4ed57fc 100644
--- a/test/test_main.py
+++ b/test/test_main.py
@@ -52,7 +52,7 @@ def test_full():
         cmd = cmd.format(sharedir, wk)
         subprocess.call(cmd.split())
 
-        stat = subprocess.call("sh trf.sh".split(), cwd=wk)
+        stat = subprocess.call("bash trf.sh".split(), cwd=wk)
 
         assert os.path.exists(wk + "/summary.html")