{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":575566333,"defaultBranch":"master","name":"pickle-corpus-code","ownerLogin":"serenalotreck","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-12-07T19:59:09.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/41377532?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1670443168.6519701","currentOid":""},"activityList":{"items":[{"before":"b7c4c11aeeb760b0b240314cc66d45a014d02e7a","after":"9f8b31607e978a974677084098c679da653e920c","ref":"refs/heads/master","pushedAt":"2023-12-20T15:20:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Update paper title and citation in README.md","shortMessageHtmlLink":"Update paper title and citation in README.md"}},{"before":"9ebcb4bb4ab90f02ff3ef2ee1968cc2e2b82a262","after":"b7c4c11aeeb760b0b240314cc66d45a014d02e7a","ref":"refs/heads/master","pushedAt":"2023-11-29T22:45:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Add publication details to readme","shortMessageHtmlLink":"Add publication details to readme"}},{"before":"e10e72a4b82dc08ba5fcef3dc6f6c4518eb7dca8","after":"9ebcb4bb4ab90f02ff3ef2ee1968cc2e2b82a262","ref":"refs/heads/master","pushedAt":"2023-11-09T17:53:49.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Move subplot labels to the right","shortMessageHtmlLink":"Move subplot labels to the right"}},{"before":"81a1865e0767d58ff8530a73289c0568359190b3","after":"e10e72a4b82dc08ba5fcef3dc6f6c4518eb7dca8","ref":"refs/heads/master","pushedAt":"2023-10-26T22:43:22.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Allow one to many mapping in filter dataset and update figures accordingly","shortMessageHtmlLink":"Allow one to many mapping in filter dataset and update figures accord…"}},{"before":"3bf0cb63fa5900cdefcb4f200fbbdcfd412f75c0","after":"81a1865e0767d58ff8530a73289c0568359190b3","ref":"refs/heads/master","pushedAt":"2023-08-22T20:16:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Add Huggingface link to README","shortMessageHtmlLink":"Add Huggingface link to README"}},{"before":"67c209583689578a2fb748eec1b4b19e3a07b8fa","after":"3bf0cb63fa5900cdefcb4f200fbbdcfd412f75c0","ref":"refs/heads/master","pushedAt":"2023-08-22T18:00:17.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Merge branch 'master' of https://github.com/serenalotreck/pickle-corpus-code","shortMessageHtmlLink":"Merge branch 'master' of https://github.com/serenalotreck/pickle-corp…"}},{"before":"a54e2573cb202af7fd4bc8e167b32b1ea5aa9478","after":"67c209583689578a2fb748eec1b4b19e3a07b8fa","ref":"refs/heads/master","pushedAt":"2023-08-22T17:58:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"543232ad13376fcf329386aa5dfc9ce4037f42d5","after":"a54e2573cb202af7fd4bc8e167b32b1ea5aa9478","ref":"refs/heads/master","pushedAt":"2023-08-18T20:32:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"2ce26f2182d0c78a0d5bac0708eba526b6c35564","after":"543232ad13376fcf329386aa5dfc9ce4037f42d5","ref":"refs/heads/master","pushedAt":"2023-08-16T21:12:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Reconfigure OOV analysis to new equation","shortMessageHtmlLink":"Reconfigure OOV analysis to new equation"}},{"before":"d1a6cb79b3a784c5d4d268c9ec223eb8888c8ec0","after":"2ce26f2182d0c78a0d5bac0708eba526b6c35564","ref":"refs/heads/master","pushedAt":"2023-08-11T18:52:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Aesthetic updates to figures","shortMessageHtmlLink":"Aesthetic updates to figures"}},{"before":"e64a5575f97e1cd3ffa376943f984c7fe3fefbf8","after":"d1a6cb79b3a784c5d4d268c9ec223eb8888c8ec0","ref":"refs/heads/master","pushedAt":"2023-08-11T18:03:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Add plot of precision and recall to mismatch type analysis","shortMessageHtmlLink":"Add plot of precision and recall to mismatch type analysis"}},{"before":"07a3d9acbbc07446277f2017bc49e90c17f86858","after":"e64a5575f97e1cd3ffa376943f984c7fe3fefbf8","ref":"refs/heads/master","pushedAt":"2023-08-11T16:58:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Add cells to GENIA filter, add tests for GENIA filter, update mismatched type analysis","shortMessageHtmlLink":"Add cells to GENIA filter, add tests for GENIA filter, update mismatc…"}},{"before":"c2f0e1541ac99b64acb0b7aa5d0ecce357597b61","after":"07a3d9acbbc07446277f2017bc49e90c17f86858","ref":"refs/heads/master","pushedAt":"2023-08-10T21:15:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Add all models to genia filtered analysis and remove type mapping from overall performance figures","shortMessageHtmlLink":"Add all models to genia filtered analysis and remove type mapping fro…"}},{"before":"0471ad1d5c87907d50d3bfaddbe72da0169dc248","after":"c2f0e1541ac99b64acb0b7aa5d0ecce357597b61","ref":"refs/heads/master","pushedAt":"2023-08-10T20:34:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Remove implicit consideration of capitalization of types on entity eval","shortMessageHtmlLink":"Remove implicit consideration of capitalization of types on entity eval"}},{"before":"9640ce4ccf074d3d571b2bee84d0bea19e655fd6","after":"0471ad1d5c87907d50d3bfaddbe72da0169dc248","ref":"refs/heads/master","pushedAt":"2023-08-09T19:11:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Add analysis of GENIA performance when PICKLE test set is filtered by GENIA types","shortMessageHtmlLink":"Add analysis of GENIA performance when PICKLE test set is filtered by…"}},{"before":"2a083fcad6576db60ef4c205fe3f112579d7d2d7","after":"9640ce4ccf074d3d571b2bee84d0bea19e655fd6","ref":"refs/heads/master","pushedAt":"2023-08-09T13:51:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Modify mismatched prediction tracker to include false positives","shortMessageHtmlLink":"Modify mismatched prediction tracker to include false positives"}},{"before":"7e4b5d3d4ca2c5ded68d4c444f67c3dc915cab28","after":"2a083fcad6576db60ef4c205fe3f112579d7d2d7","ref":"refs/heads/master","pushedAt":"2023-08-09T13:50:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Add script to filter PICKLE types down to GENIA","shortMessageHtmlLink":"Add script to filter PICKLE types down to GENIA"}},{"before":"49a02a8dbbde2002027319fbf1e95bff2c4f1939","after":"7e4b5d3d4ca2c5ded68d4c444f67c3dc915cab28","ref":"refs/heads/master","pushedAt":"2023-07-21T18:36:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Add remaining data tables","shortMessageHtmlLink":"Add remaining data tables"}},{"before":"e1d42a897f7d10d36518f42a0df97c9c7a9b3131","after":"49a02a8dbbde2002027319fbf1e95bff2c4f1939","ref":"refs/heads/master","pushedAt":"2023-07-20T20:26:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Rename notebooks and put final touches on figures for draft","shortMessageHtmlLink":"Rename notebooks and put final touches on figures for draft"}},{"before":"1a5d50ec8dbb179788f7c29e06e260ccb80e0f17","after":"e1d42a897f7d10d36518f42a0df97c9c7a9b3131","ref":"refs/heads/master","pushedAt":"2023-07-19T21:17:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Restructure OOV dir and update figures","shortMessageHtmlLink":"Restructure OOV dir and update figures"}},{"before":"1f72962181433ee2a736ad715a1503fdfb422976","after":"1a5d50ec8dbb179788f7c29e06e260ccb80e0f17","ref":"refs/heads/master","pushedAt":"2023-07-18T23:58:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Fix silent memory failure on chemprot performance in model performance fig and work on corpus size fig formatting","shortMessageHtmlLink":"Fix silent memory failure on chemprot performance in model performanc…"}},{"before":"ec6c5f83409d4d799ea52f4a8baa3bec2b066a9d","after":"1f72962181433ee2a736ad715a1503fdfb422976","ref":"refs/heads/master","pushedAt":"2023-07-17T23:21:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"WIP make new model performance figure","shortMessageHtmlLink":"WIP make new model performance figure"}},{"before":"81c03cdf1bfa14d841d04354c28d637e364d21c3","after":"ec6c5f83409d4d799ea52f4a8baa3bec2b066a9d","ref":"refs/heads/master","pushedAt":"2023-07-17T01:01:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Change summary: train split, doc split, figure updates, type map\n\nDetailed change summary: Adds a script to perform a train/test/dev split on a jsonl dataset. Adds a script to split up documents that are more than 20 sentences long in order to avoid OOM errors when training a DyGIE++ model. Adds modifications to run_dygiepp and run_pure that allow evaluation to be optional. Updates IAA figure to include most recent round. Imports DyGIE++ performances on new PICKLE test set and makes a draft figure. UPdates corpus size analysis figure with the by-tens run for all datasets.","shortMessageHtmlLink":"Change summary: train split, doc split, figure updates, type map"}},{"before":"5a0d7d9e754608abe7b310020ea4abefa455d563","after":"81c03cdf1bfa14d841d04354c28d637e364d21c3","ref":"refs/heads/master","pushedAt":"2023-07-04T21:25:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Add GENIA and use coreference for SciERC in corpus size analysis","shortMessageHtmlLink":"Add GENIA and use coreference for SciERC in corpus size analysis"}},{"before":"7aa5a2d4c4f44b1e3674801bc396bdab81b95b91","after":"5a0d7d9e754608abe7b310020ea4abefa455d563","ref":"refs/heads/master","pushedAt":"2023-07-03T20:15:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Finish debugging tests for eval updates","shortMessageHtmlLink":"Finish debugging tests for eval updates"}},{"before":"8146d9b688b63916f65698c6f0a2b048cbcf82af","after":"7aa5a2d4c4f44b1e3674801bc396bdab81b95b91","ref":"refs/heads/master","pushedAt":"2023-07-02T23:29:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Finish debugging updated eval code and use to update corpus size analysis with types","shortMessageHtmlLink":"Finish debugging updated eval code and use to update corpus size anal…"}},{"before":"290885215e8eedd40c1df071cb51f5792ab8fe75","after":"8146d9b688b63916f65698c6f0a2b048cbcf82af","ref":"refs/heads/master","pushedAt":"2023-07-02T19:43:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Remove dup dropping and add all type-checking functionality to eval, draft all tests","shortMessageHtmlLink":"Remove dup dropping and add all type-checking functionality to eval, …"}},{"before":"d222d1850d10e7097d12aca6a7a2a68044d21218","after":"290885215e8eedd40c1df071cb51f5792ab8fe75","ref":"refs/heads/master","pushedAt":"2023-06-30T19:54:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"WIP add tests for checking types in eval","shortMessageHtmlLink":"WIP add tests for checking types in eval"}},{"before":"76dc5eac2b924b69fdb16845a01135b6a4e266ac","after":"d222d1850d10e7097d12aca6a7a2a68044d21218","ref":"refs/heads/master","pushedAt":"2023-06-30T19:30:17.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Remove unittest.main() from updated tests","shortMessageHtmlLink":"Remove unittest.main() from updated tests"}},{"before":"61cf3b35ec2adcec571c6c350539070522016e95","after":"76dc5eac2b924b69fdb16845a01135b6a4e266ac","ref":"refs/heads/master","pushedAt":"2023-06-29T19:53:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"serenalotreck","name":"Serena Lotreck","path":"/serenalotreck","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/41377532?s=80&v=4"},"commit":{"message":"Add code and tests to map types for jsonl data, add chemprot as option to run_dygiepp","shortMessageHtmlLink":"Add code and tests to map types for jsonl data, add chemprot as optio…"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAADztP2UwA","startCursor":null,"endCursor":null}},"title":"Activity · serenalotreck/pickle-corpus-code"}