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πŸ¦€πŸ¦€πŸ¦€ Sort spikes from extra-cellular recordings using neural networks. Fully automated.
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+crabsort fixed #239 Jul 4, 2019
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+csLoadFile many bug fixes, started work on testing framework Jul 1, 2019
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@crabsort added some new dim red methods Jul 15, 2019
docs improvements to consolidate, now can make a matrix directly Apr 9, 2019
.gitignore fixes May 1, 2019
LICENSE.txt can find spikes in simple cases. +readme Dec 15, 2017
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README.md

πŸ¦€ crabsort

GitHub last commit

Installation

Using a MATLAB toolbox

The simplest way to install crabsort is to download this toolbox. Drag it onto your MATLAB workspace, and it should automatically install itself.

Using git

Clone these repos:

# bash
git clone https://github.com/sg-s/crabsort
git clone https://github.com/sg-s/puppeteer
git clone https://github.com/sg-s/srinivas.gs_mtools

and add the all to your MATLAB path.

Updating and uninstalling

crabsort supports built-in methods to upgrade and update:

% matlab
crabsort.update
crabsort.uninstall

Usage

[more detailed docs coming soon...]

Keyboard actions

Key Action
a Scroll to beginning of file
z Scroll to end of file
Spacebar Jump to next uncertain spike (as predicted by Neural Network)
g generate data for Neural network
⇧ + ↑ jump to the weirdest spike
⇧ + ↓ jump to a next less weird spike
p Predict spikes using Neural network
r reset zoom
0 Set channel as having no spikes
↑ Select channel above currently chosen channel
↓ Select channel below currently chosen channel
β†’ Load next file in dataset
← Load next file in dataset
p Predict spikes using Neural network

License

GPL v3

If you plan to use crabsort for a publication, please write to me for appropriate citation.

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