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TestData_1
TestData_2
TestData_3
README
fastq.fq
run_all_test.sh

README

run_all_test.sh will run tests in each TestData_* directory.
TestData_1: paired-end Illumina GA2x data with base 64 quality values.
TestData_2: paired-end Illumina GA2x data with base 33 quality values.
TestData_3: non paired-end Illumina GA2x data with base 64 quality values.

All tests now require that bowtie2 be in your $PATH.
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