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@Roche @mcveanlab @ga4gh @scrm @hybridLambda @luntergroup @bigdatapractice2017 @DEploid-dev
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shajoezhu/README.md

Hi there 👋

I am a lead statistical programming analyst and lead software engineer at Roche. My daily job involves wide range of data analysis activities in pharmaceutical industry and developing software packages to support other data scientist at Roche.

Before joining Roche, I was a Senior Data Scientist at Sensyne Health. I also worked as a research associate at the Oxford Big Data Institute and Wellcome Centre for Human Genetics, at where my job mainly focused on malaria parasite genomes and statistical genomic researches using a lot of coalescent theory. On the side, I also worked as a research consultant at the BGI, at where I contributed and developed methods for data storage using DNA.

I love programming! Check out some of open source tools at this page.

GitHub Streak

朱砂于2006年新西兰坎特伯雷大学破格录取直接升入大学二年级,在校成绩优异突出(全校前15%),连续在2008,2009获得数学统计系奖学金。本科毕业后留校直博,连续三年获得坎大一等博士学奖学金,于2013年取得统计博士学位,同年荣获由中国国家留学基金委颁发的国家优秀自费留学生奖(新西兰两位获奖者之一),并且被牛津大学录用并开展博士后科研工作, 立志于基因组溯祖模型的研究,在人类种群分布以及恶性疟疾疟原虫分型的运用。先后发表17篇学术论文,其中一作文章10篇,通讯作者文章4篇。公开发表6个开源软件包和软件库,支持多种编程语言下载(其中软件scrm在cran的下载量超过35000次)。并多次受邀在国际学术会议和论坛发言,尤其是在2019年1月,作为牛津大学的五位学生代表之一在新加坡参加了全球科学家峰会,并向多位诺贝尔奖,菲尔兹奖,千年科技奖获奖者交流学习。在牛津大数据研究所博后期间,被深圳华大基因公司特聘为海外专家顾问,联合开发DNA存储技术,指导并研发代码转录及压缩的算法和软件,并发表3篇学术论文(其中一篇被Nature Computational Science接收)。2019年,加入人工智能制药公司Sensyne Health, 作为“血液抗凝剂对心力衰竭患者的益处研究”技术项目负责人,设计并使用生存分析来检验假设。研究结果在股东大会和伦敦交易所展示。自2020年加入罗氏制药,先后在三个产品研发团队担任技术带头人, 主要成果包括

  1. 通过软件开发,填补了数据处理软件的空缺,并拓展运用在14个课题中,实现了数据处理的一致性,并减少了十倍的软件维护工作量。
  2. 通过云计算改善程序流程构架,运行时间从4小时缩短到半小时,显著提高了团队工作效率。
  3. 特发性肺纤维化与生物标志物的专利申请书。
  4. 2021年评选罗氏产品部的最高奖项“卓越突破奖”,本人带领的高级软件团队在180个团队参选评比中,为14个获奖团队之一。

Pinned

  1. DEploid-dev/DEploid DEploid-dev/DEploid Public

    dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Ma…

    C++ 20 8

  2. scrm/scrm scrm/scrm Public

    A coalescent simulator for genome-scale sequences

    C++ 39 7

  3. luntergroup/smcsmc luntergroup/smcsmc Public

    Demographic inference from whole genomes

    C++ 11 4

  4. ntpz870817/Chamaeleo ntpz870817/Chamaeleo Public

    BGI DNA Storage Kit

    Python 28 8

  5. insightsengineering/tern insightsengineering/tern Public

    Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials

    R 61 8

  6. insightsengineering/teal.modules.clinical insightsengineering/teal.modules.clinical Public

    Provides teal modules for the standard clinical trials outputs

    R 25 13

2,172 contributions in the last year

5 contributions on November 27th.6 contributions on December 4th.4 contributions on December 11th.28 contributions on December 18th.2 contributions on December 25th.2 contributions on January 1st.4 contributions on January 8th.4 contributions on January 15th.2 contributions on January 22nd.2 contributions on January 29th.7 contributions on February 5th.5 contributions on February 12th.4 contributions on February 19th.2 contributions on February 26th.9 contributions on March 5th.7 contributions on March 12th.4 contributions on March 19th.3 contributions on March 26th.6 contributions on April 2nd.No contributions on April 9th.2 contributions on April 16th.4 contributions on April 23rd.2 contributions on April 30th.2 contributions on May 7th.No contributions on May 14th.4 contributions on May 21st.8 contributions on May 28th.No contributions on June 4th.No contributions on June 11th.2 contributions on June 18th.No contributions on June 25th.2 contributions on July 2nd.4 contributions on 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Contribution Graph
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Activity overview

A graph representing shajoezhu's contributions from November 27, 2022 to December 01, 2023. The contributions are 74% commits, 13% issues, 10% code review, 3% pull requests.

Contribution activity

December 1, 2023

Reviewed 5 pull requests in 4 repositories
insightsengineering/.github 2 pull requests
insightsengineering/tern 1 pull request
insightsengineering/teal.modules.clinical 1 pull request
insightsengineering/rlistings 1 pull request

Created an issue in insightsengineering/teal.modules.clinical that received 5 comments

DESCRIPTION file teal.report version is outdated teal.reporter (>= 0.2.0),

I am getting an error when testing the example Listening on http://127.0.0.1:5913 [INFO] 2023-12-01 06:24:42.5914 pid:1924 token:[32e5f908] teal …

5 comments

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