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Commits on Feb 19, 2014
  1. Cell size issue fix

    shanqing-cai committed Feb 19, 2014
  2. Various changes

    shanqing-cai committed Feb 19, 2014
Commits on Nov 20, 2013
  1. Added GT measure text file writing

    shanqing-cai committed Nov 20, 2013
    	modified:   analyze_pt2_seedOnly_cmat.m
    	new file:   writeNodeGraphTheoryMeasTxt.m
Commits on Nov 18, 2013
  1. Changes for ba3

    shanqing-cai committed Nov 18, 2013
  2. Added option --oldver

    shanqing-cai committed Nov 18, 2013
  3. Added option --xh

    shanqing-cai committed Nov 18, 2013
    for supporting cross-hemisphere NBS analysis
    
    	modified:   nbs_bct_sc.m
Commits on Nov 16, 2013
  1. Adding support for --cw

    shanqing-cai committed Nov 16, 2013
    --cw is for the use of Corpus Callosum as a waypoint, mainly for cross-hemisphere tracking.
  2. Making standalone

    shanqing-cai committed Nov 16, 2013
  3. Added support for xh

    shanqing-cai committed Nov 16, 2013
    	modified:   get_aparc12_cortical_rois.m
  4. Added hemi option xh and option --cw

    shanqing-cai committed Nov 16, 2013
    xh is for cross-hemisphere connectivity analysis.
    
    --cw is for the use of Corpus Callosum as a waypoint, mainly for the between-hemisphere analysis.
Commits on Nov 7, 2013
  1. Now supporttwo-hemisphere mode (lh,rh)

    shanqing-cai committed Nov 7, 2013
    	modified:   batch_seedOnly_cw_pt2.py
  2. Performance increase by using nibabel

    shanqing-cai committed Nov 7, 2013
    	modified:   aparc12_probtrackx_cortical_connmat.py
  3. New batch script for cross-hemisphere probtrackx2

    shanqing-cai committed Nov 7, 2013
    	new file:   batch_seedOnly_cw_pt2.py
  4. Added option cw: CC waypoint

    shanqing-cai committed Nov 7, 2013
    	modified:   aparc12_probtrackx_2.py
  5. Changes for cross-hemisphere connectivity matrix

    shanqing-cai committed Nov 7, 2013
    aparc12_probtrackx_cortical_connmat.py now supports the cross-hemisphere (xh) mode.
    
    The aparc12_oldVer.py is created to allow quick (but hacky) roll-back to the old aparc12 ROI names (e.g., Hg --> H).
    
    	new file:   aparc12_oldVer.py
    	modified:   aparc12_probtrackx_cortical_connmat.py
Commits on Oct 7, 2013
  1. Scripts and routines for parcellation morphology

    shanqing-cai committed Oct 7, 2013
    Usage example:
          analyze_parc.py /users/cais/STUT/FSDATA 'S??' aparc12 --skipSubj S24
    
    Use --redo to force redoing of time-consuming steps
  2. Some changes...

    shanqing-cai committed Oct 7, 2013
Commits on Sep 21, 2013
  1. chmod

    shanqing-cai committed Sep 21, 2013
  2. Minor modifications

    shanqing-cai committed Sep 21, 2013
Commits on Aug 4, 2013
  1. Adding row_col_swap.py

    shanqing-cai committed Aug 4, 2013
Commits on Aug 3, 2013
Commits on Aug 2, 2013
  1. Adding dtiprep.py

    shanqing-cai committed Aug 2, 2013
Commits on Jun 22, 2013
  1. Minor Changes

    shanqing-cai committed Jun 22, 2013
Commits on Jun 21, 2013
  1. Minor changes

    shanqing-cai committed Jun 21, 2013
Commits on Jun 19, 2013