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Commits on Mar 29, 2014
  1. Added RHY_AWS_M09

    committed Mar 29, 2014
Commits on Mar 5, 2014
  1. Added new steps: probtrackx_subcort and subcort_conn_mat

    TODO: Write status checking code for these two steps
    committed Mar 5, 2014
Commits on Mar 3, 2014
  1. Added subject RHY ANS_F02

    committed Mar 3, 2014
Commits on Feb 26, 2014
  1. New script for reproducibility tests

    FA and TNS
    committed Feb 26, 2014
  2. Added new option --symm-tract

    to allow the analysis of symmetrical connectivity matrices
    committed Feb 26, 2014
  3. Enabled rep - FA/MD single track and TNS

    Showing correlation measures.
    committed Feb 26, 2014
Commits on Feb 25, 2014
  1. Added MIT License

    committed Feb 25, 2014
Commits on Feb 22, 2014
  1. Added RHY_AWS_M03

    committed Feb 22, 2014
Commits on Feb 10, 2014
  1. Added RHY_ANS_M08

    committed Feb 10, 2014
Commits on Jan 31, 2014
  1. Added subject RHY_AWS_M07

    committed Jan 31, 2014
  2. Minor changes

    committed Jan 31, 2014
Commits on Jan 29, 2014
  1. Minor chnages

    Added a missing field to dwi_project_info.py
    committed Jan 29, 2014
  2. byGroup analysis

    committed Jan 29, 2014
Commits on Jan 27, 2014
  1. Added step "tracula_path_post" to dwi_analysis

    This step generates a .mat file that contains data extracted from the pathstats.byvoxel.txt and pathstats.overall.txt from all paths in the tracula configuration file.
    committed Jan 27, 2014
  2. Disabled seed size check; added util function for dpath

    	modified:   tractography.py
    	modified:   tracula_utils.py
    committed Jan 27, 2014
Commits on Jan 25, 2014
Commits on Jan 24, 2014
  1. Re-wrote the MATLAB scripts for querying the SQL DB

    The two .m scripts: get_subject_master_code.m and get_subject_demo_info.m now utilize the Python scripts.
    committed Jan 24, 2014
  2. Made clear that fix_coreg is an optional step

    in option "status" of dwi_analysis.py
    committed Jan 24, 2014
Commits on Jan 23, 2014
  1. Added new option "status"

    to script dwi_analysis.py, for supporting subject status checking.
    
    	modified:   dwi_analysis.py
    	modified:   tracula_utils.py
    committed Jan 23, 2014
Commits on Jan 22, 2014
  1. Added new py script for demographic query from SQL

    Usage example:
    ./get_subject_info.py gender --id CAT,RHY,SEQ 12,AWS_M01,SEQ03001
    ./get_subject_info.py age --id RHY,SEQPDS AWS_F01,SEQ03P03
    
    	new file:   get_subject_info.py
    	modified:   get_subject_master_code.py
    committed Jan 22, 2014
  2. Revised the way the py SQL script gets info

    A file with the name "mega_sql_settings" needs to be created in the subject's home directory. This file should have four lines, which correspond to
    1) SQL server host name
    2) SQL database name
    3) SQL user name
    4) SQL password
    
    e.g.,
    
    two.bu.edu
    MEGA
    scai
    sp1eeCH2
    
    Command line usage example:
    get_subject_master_code.py STUT,CAT S05,12
    committed Jan 22, 2014
Commits on Jan 18, 2014
  1. Added RHY_AWS_F05

    committed Jan 18, 2014
Commits on Jan 17, 2014
  1. Added RHY_AWS_M06

    committed Jan 17, 2014
Commits on Jan 9, 2014
  1. Added subject RHY_AWS_M05

    committed Jan 9, 2014
Commits on Jan 6, 2014
  1. Added subject RHY_AWS_F04

    committed Jan 6, 2014