Skip to content
Circ2Traits: association of circular RNAs with diseases and traits
Branch: master
Clone or download
Latest commit 6d65cb5 Nov 18, 2019
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
README.md Update README.md Nov 18, 2019
all_disease_set.txt Add files via upload Nov 18, 2019
circRNA_info_all.txt Add files via upload Nov 18, 2019
gwascatalog.txt Add files via upload Nov 18, 2019

README.md

circ2Traits

Public datasets from the database Circ2Traits (http://gyanxet-beta.com/circdb/)

  1. all_disease_set.txt : The common miRNA, target mRNAs target lncRNAs and circular RNAs are separated by tab. The set of mRNA lncRNAs or circular RNAs are separated among themselves by semicolon. The conserved mRNA targets of miRNAs are predicted by Targetscan.
  2. circRNA_info_all.txt: Download the informations about circular RNA candidates (circular RNA candidates are collected from Memczak et al, 2013) along with variations, Ago interaction sites and GWAS marker SNPs stored in a tab separated file.
  3. gwascatalog.txt: Download the GWAS catalogue collected from NHGRI

Publication:

Suman Ghosal, Shaoli Das, Rituparno Sen, Piyali Basak, Jayprokas Chakrabarti: Circ2Traits: A comprehensive database for circular RNA potentially associated with disease and traits. Frontiers in Genetics 12/2013; 4:283. DOI:10.3389/fgene.2013.00283

You can’t perform that action at this time.