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Shen Lab at Mount Sinai

Pinned repositories

  1. DeepRegFinder is a deep learning based program used to identify DNA regulatory elements using ChIP-seq

    Python 1

  2. Quick mining and visualization of NGS data by integrating genomic databases

    R 175 61

  3. Genome databases generation pipeline for ngs.plot and region_analysis.

    Shell 10 4

  4. Differential analysis for ChIP-seq with biological replicates

    Perl 26 15

  5. A python script used to annotate genomic intervals.

    Python 16 9

  6. This repository hosts an automated NGS data analysis (RNA-seq and ChIP-seq) pipeline created using Snakemake.

    Python 1


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