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R

Table of Contents

Base

update all R packages

install.packages("rvcheck")
update_all()

Tutorial 

Packages

Text

Performance

docs

packages

Data wrangling

data structure

  • tibble - A tibble, or tbl_df, is a modern reimagining of the data.frame, keeping what time has proven to be effective, and throwing out what is not.

tools

CLI

ML

docs

packages

  • caret - (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models
  • ROCR - visualizing classifier performance in R, with only 3 commands
  • xgboost - Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Flink and DataFlow

Visualization

book

misc

circos like

Shiny

Color

Heatmap

ggplot2

Extended packages. More: RStartHere, ggally

ggplot2 extensions - gallery

Tutorial

Statistics

book

misc

Cluster

File formats

  • rio - A Swiss-army knife for data I/O

reads xlsx/xls library(xslx)

data <- read.xlsx("datafile.xlsx", 1)
library(gdata)
# Read first sheet
data <- read.xls("datafile.xls")

Misc